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875  structures 20391  species 28  interactions 269790  sequences 773  architectures

Clan: Peptidase_MH (CL0035)

Summary

Peptidase clan MH/MC/MF Add an annotation

This clan contains peptidases belonging to MEROPS clan MH, MC and MF. We also include Nicastrin that is part of the gamma secretase complex and not known to be a peptidase.

This clan contains 13 families and the total number of domains in the clan is 269790. The clan was built by A Bateman.

Members

This clan contains the following 13 member families:

Amidase_3 AstE_AspA DUF2817 DUF4910 Nicastrin Peptidase_M14 Peptidase_M17 Peptidase_M18 Peptidase_M20 Peptidase_M28 Peptidase_M42 Peptidase_M99 SpoIIP

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Peptidase_M20 (PF01546) 134626 (49.9%) View
Amidase_3 (PF01520) 36869 (13.7%) View
Peptidase_M42 (PF05343) 25384 (9.4%) View
Peptidase_M17 (PF00883) 21843 (8.1%) View
Peptidase_M28 (PF04389) 18362 (6.8%) View
Peptidase_M14 (PF00246) 12774 (4.7%) View
AstE_AspA (PF04952) 10590 (3.9%) View
Peptidase_M18 (PF02127) 5966 (2.2%) View
SpoIIP (PF07454) 1566 (0.6%) View
Peptidase_M99 (PF17033) 500 (0.2%) View
DUF4910 (PF16254) 463 (0.2%) View
DUF2817 (PF10994) 440 (0.2%) View
Nicastrin (PF05450) 407 (0.2%) View
Total: 13 Total: 269790 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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