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375  structures 66  species 71  interactions 2580  sequences 50  architectures

Clan: 4H_Cytokine (CL0053)

Summary

4-helical cytokine superfamily Add an annotation

Cytokines are regulatory peptides that can be produced by various cells for communicating and orchestrating the large multicellular system. Cytokines are key mediators of hematopoiesis, immunity, allergy, inflammation, tissue remodeling, angiogenesis, and embryonic development [2]. This superfamily includes both the long and short chain helical cytokines.

This clan contains 25 families and the total number of domains in the clan is 2580. The clan was built by A Bateman.

Literature references

  1. Hill EE, Morea V, Chothia C; , J Mol Biol 2002;322:205-233.: Sequence conservation in families whose members have little or no sequence similarity: the four-helical cytokines and cytochromes. PUBMED:12215425 EPMC:12215425
  2. Ouyang S, He F; , J Mol Evol 2003;56:131-136.: Phylogeny of a growth hormone-like cytokine superfamily based upon 3D structure. PUBMED:12574859 EPMC:12574859

Members

This clan contains the following 25 member families:

CNTF CSF-1 EPO_TPO Flt3_lig GCSF GM_CSF Hormone_1 IFN-gamma IL10 IL11 IL12 IL13 IL15 IL2 IL22 IL3 IL34 IL4 IL5 IL6 Interferon Leptin LIF_OSM PRF SCF

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Interferon (PF00143) 596 (23.1%) View
Hormone_1 (PF00103) 422 (16.4%) View
IL10 (PF00726) 193 (7.5%) View
EPO_TPO (PF00758) 112 (4.3%) View
IL15 (PF02372) 107 (4.1%) View
SCF (PF02404) 95 (3.7%) View
LIF_OSM (PF01291) 93 (3.6%) View
PRF (PF06875) 84 (3.3%) View
IL6 (PF00489) 78 (3.0%) View
IL12 (PF03039) 71 (2.8%) View
CSF-1 (PF05337) 65 (2.5%) View
CNTF (PF01110) 59 (2.3%) View
IL22 (PF14565) 57 (2.2%) View
continued
Pfam family Num. domains Alignment
GCSF (PF16647) 56 (2.2%) View
IL4 (PF00727) 54 (2.1%) View
Leptin (PF02024) 53 (2.1%) View
Flt3_lig (PF02947) 51 (2.0%) View
IFN-gamma (PF00714) 50 (1.9%) View
IL11 (PF07400) 49 (1.9%) View
IL34 (PF15036) 47 (1.8%) View
IL2 (PF00715) 41 (1.6%) View
GM_CSF (PF01109) 41 (1.6%) View
IL5 (PF02025) 40 (1.6%) View
IL13 (PF03487) 37 (1.4%) View
IL3 (PF02059) 29 (1.1%) View
Total: 25 Total: 2580 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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