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2089  structures 23837  species 26  interactions 646760  sequences 924  architectures

Clan: PLP_aminotran (CL0061)

Summary

PLP dependent aminotransferase superfamily Add an annotation

This superfamily contains a variety of PLP-dependent enzymes.

This clan contains 15 families and the total number of domains in the clan is 646760. The clan was built by A Bateman.

Members

This clan contains the following 15 member families:

Alliinase_C Aminotran_1_2 Aminotran_3 Aminotran_5 Aminotran_MocR Beta_elim_lyase Cys_Met_Meta_PP DegT_DnrJ_EryC1 GDC-P Met_gamma_lyase OKR_DC_1 Pyridoxal_deC SelA SepSecS SHMT

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Aminotran_1_2 (PF00155) 221030 (34.2%) View
Aminotran_3 (PF00202) 110266 (17.0%) View
Aminotran_5 (PF00266) 97141 (15.0%) View
Cys_Met_Meta_PP (PF01053) 52609 (8.1%) View
DegT_DnrJ_EryC1 (PF01041) 29010 (4.5%) View
OKR_DC_1 (PF01276) 27899 (4.3%) View
SHMT (PF00464) 25845 (4.0%) View
GDC-P (PF02347) 25501 (3.9%) View
Pyridoxal_deC (PF00282) 21776 (3.4%) View
Beta_elim_lyase (PF01212) 17013 (2.6%) View
SelA (PF03841) 9220 (1.4%) View
Met_gamma_lyase (PF06838) 6124 (0.9%) View
Aminotran_MocR (PF12897) 2560 (0.4%) View
SepSecS (PF05889) 418 (0.1%) View
Alliinase_C (PF04864) 348 (0.1%) View
Total: 15 Total: 646760 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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