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1854  structures 2197  species 166  interactions 58539  sequences 1457  architectures

Clan: Zn_Beta_Ribbon (CL0167)

Summary

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
zf-DHHC (PF01529) 5630 (9.6%) View
GATA (PF00320) 4569 (7.8%) View
zf-RanBP (PF00641) 4362 (7.5%) View
zf-C4_Topoisom (PF01396) 3627 (6.2%) View
OrfB_Zn_ribbon (PF07282) 2839 (4.8%) View
zf-FPG_IleRS (PF06827) 2053 (3.5%) View
Ribosomal_L33 (PF00471) 2008 (3.4%) View
zf-CHC2 (PF01807) 1944 (3.3%) View
TFIIS_C (PF01096) 1908 (3.3%) View
Ribosomal_L32p (PF01783) 1908 (3.3%) View
zf-dskA_traR (PF01258) 1650 (2.8%) View
zf-GRF (PF06839) 1508 (2.6%) View
Zn_ribbon_recom (PF13408) 1495 (2.6%) View
TF_Zn_Ribbon (PF08271) 1244 (2.1%) View
zinc_ribbon_2 (PF13240) 1236 (2.1%) View
Trm112p (PF03966) 1184 (2.0%) View
zf-ZPR1 (PF03367) 971 (1.7%) View
RNA_POL_M_15KD (PF02150) 859 (1.5%) View
zf-NADH-PPase (PF09297) 854 (1.5%) View
Zn-ribbon_8 (PF09723) 837 (1.4%) View
DZR (PF12773) 820 (1.4%) View
zf-ISL3 (PF14690) 772 (1.3%) View
DUF35_N (PF12172) 752 (1.3%) View
zf-CSL (PF05207) 717 (1.2%) View
Ribosomal_L44 (PF00935) 710 (1.2%) View
Ribosomal_S27e (PF01667) 694 (1.2%) View
Ribosomal_L37ae (PF01780) 653 (1.1%) View
Ribosomal_S27 (PF01599) 627 (1.1%) View
Ribosomal_L37e (PF01907) 605 (1.0%) View
Ribosomal_L40e (PF01020) 602 (1.0%) View
Spt4 (PF06093) 539 (0.9%) View
zinc_ribbon_9 (PF14369) 506 (0.9%) View
Elf1 (PF05129) 488 (0.8%) View
DNA_RNApol_7kD (PF03604) 448 (0.8%) View
PhnA_Zn_Ribbon (PF08274) 445 (0.8%) View
NOB1_Zn_bind (PF08772) 430 (0.7%) View
Toprim_Crpt (PF13342) 429 (0.7%) View
DUF4379 (PF14311) 418 (0.7%) View
continued
Pfam family Num. domains Alignment
zinc_ribbon_10 (PF10058) 403 (0.7%) View
zf-TFIIB (PF13453) 355 (0.6%) View
Zn_Tnp_IS1595 (PF12760) 330 (0.6%) View
Auto_anti-p27 (PF06677) 310 (0.5%) View
Topo_Zn_Ribbon (PF08272) 302 (0.5%) View
Zn_Tnp_IS1 (PF03811) 302 (0.5%) View
zf-trcl (PF13451) 283 (0.5%) View
Nudix_N_2 (PF14803) 270 (0.5%) View
zf-RRN7 (PF11781) 229 (0.4%) View
zinc_ribbon_12 (PF11331) 211 (0.4%) View
zinc_ribbon_4 (PF13717) 205 (0.4%) View
zf-ribbon_3 (PF13248) 200 (0.3%) View
zinc_ribbon_15 (PF17032) 185 (0.3%) View
zinc-ribbon_6 (PF10005) 133 (0.2%) View
DUF1451 (PF07295) 133 (0.2%) View
DUF2387 (PF09526) 123 (0.2%) View
Ogr_Delta (PF04606) 118 (0.2%) View
Prim_Zn_Ribbon (PF08273) 113 (0.2%) View
zinc_ribbon_5 (PF13719) 103 (0.2%) View
Tnp_zf-ribbon_2 (PF13842) 97 (0.2%) View
zinc_ribbon_13 (PF09855) 92 (0.2%) View
DUF1610 (PF07754) 90 (0.2%) View
DUF2072 (PF09845) 88 (0.2%) View
Lar_restr_allev (PF14354) 80 (0.1%) View
UPF0547 (PF10571) 80 (0.1%) View
CpXC (PF14353) 78 (0.1%) View
DUF2614 (PF11023) 57 (0.1%) View
zinc-ribbons_6 (PF07191) 51 (0.1%) View
DUF2116 (PF09889) 49 (0.1%) View
DUF2180 (PF09947) 47 (0.1%) View
A2L_zn_ribbon (PF08792) 31 (0.1%) View
Mu-like_Com (PF10122) 28 (0.0%) View
zinc_ribbon_11 (PF11682) 7 (0.0%) View
NinF (PF05810) 7 (0.0%) View
Baculo_LEF5_C (PF11792) 5 (0.0%) View
DUF1936 (PF09151) 3 (0.0%) View
Total: 74 Total: 58539 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 166 interactions for this clan. More...

Interacting families
A B
Anticodon_1 zf-FPG_IleRS
CBS DUF1936
DUF1936 CBS
Fapy_DNA_glyco zf-FPG_IleRS
FmdE zf-dskA_traR
GATA LIM
zf-C2H2_6
H2TH zf-FPG_IleRS
KOW Ribosomal_L40e
NmrA GATA
NUDIX Nudix_N_2
zf-NADH-PPase
NUDIX-like zf-NADH-PPase
Nudix_N_2 NUDIX
Nudix_N_2
Ras zf-RanBP
Ribosomal_L1 Ribosomal_L33
Ribosomal_L44
Ribosomal_L13 Ribosomal_L37ae
Ribosomal_L37e
Ribosomal_L44
Ribosomal_L14e Ribosomal_L40e
Ribosomal_L15e Ribosomal_L40e
Ribosomal_L44
Ribosomal_L17 Ribosomal_L32p
Ribosomal_L18_c Ribosomal_L37e
Ribosomal_L18A Ribosomal_L40e
Ribosomal_L18p Ribosomal_L44
Ribosomal_L19e Ribosomal_L44
Ribosomal_L2 Ribosomal_L37ae
Ribosomal_L44
Ribosomal_L20 Ribosomal_L32p
Ribosomal_L22 Ribosomal_L32p
Ribosomal_L27A Ribosomal_L37ae
Ribosomal_L44
Ribosomal_L28e Ribosomal_L37ae
Ribosomal_L29 Ribosomal_L37ae
Ribosomal_L40e
Ribosomal_L2_C Ribosomal_L37ae
Ribosomal_L3 Ribosomal_L37ae
Ribosomal_L44
Ribosomal_L31e Ribosomal_L44
Ribosomal_L32e Ribosomal_L37ae
Ribosomal_L40e
Ribosomal_L32p Ribosomal_L1
Ribosomal_L17
Ribosomal_L20
Ribosomal_L22
Ribosomal_L33 Ribosomal_L2
Ribosomal_L2_C
Ribosomal_L35p
Ribosomal_L34e Ribosomal_L37ae
Ribosomal_L37ae Ribosomal_L13
Ribosomal_L14
Ribosomal_L2
Ribosomal_L22
Ribosomal_L24e
Ribosomal_L29
Ribosomal_L2_C
Ribosomal_L3
Ribosomal_L30
Ribosomal_L30_N
Ribosomal_L35Ae
Ribosomal_L5
Ribosomal_L7Ae
Ribosomal_L37e Ribosomal_L13
Ribosomal_L13e
Ribosomal_L15e
Ribosomal_L16
Ribosomal_L22
Ribosomal_L27A
Ribosomal_L3
Ribosomal_L34e
Ribosomal_L39
Ribosomal_L4
Ribosomal_L5
Ribosomal_L5_C
Ribosomal_L7Ae
Ribosomal_L38e Ribosomal_L40e
Ribosomal_L39 Ribosomal_L37e
Ribosomal_L44
Ribosomal_L4 Ribosomal_L37e
Ribosomal_L40e Ribosomal_60s
Ribosomal_L14e
Ribosomal_L18A
Ribosomal_L18p
Ribosomal_L24e
Ribosomal_L29
Ribosomal_L30_N
Ribosomal_L36e
Ribosomal_L44 Ribos_L4_asso_C
Ribosomal_L14
Ribosomal_L14e
Ribosomal_L15e
Ribosomal_L24e
Ribosomal_L27A
Ribosomal_L29e
Ribosomal_L3
Ribosomal_L30
Ribosomal_L30_N
Ribosomal_L35Ae
Ribosomal_L4
Ribosomal_L6e
Ribosomal_L6 Ribosomal_L37ae
Ribosomal_L40e
Ribosomal_L6e Ribosomal_L40e
Ribosomal_L7Ae Ribosomal_L37ae
Ribosomal_L37e
Ribosomal_L40e
Ribosomal_S27
Ribosomal_S11 Ribosomal_S27e
Ribosomal_S13_N Ribosomal_S27e
Ribosomal_S14 Ribosomal_S27
Ribosomal_S15 Ribosomal_S27e
Ribosomal_S27 Ribosomal_L7Ae
Ribosomal_S11
Ribosomal_S25
Ribosomal_S28e
Ribosomal_S7
Ribosomal_S7e
Ribosomal_S9
Ribosomal_S27e Ribosomal_S11
Ribosomal_S13_N
Ribosomal_S26e
Ribosomal_S27e
Ribosomal_S28e Ribosomal_S27
Ribosomal_S3Ae Ribosomal_S27e
Ribosomal_S7 Ribosomal_S27
RNA_pol_A_bac DNA_RNApol_7kD
RNA_pol_Rpb1_1 TF_Zn_Ribbon
RNA_pol_Rpb1_2 TF_Zn_Ribbon
TFIIS_C
RNA_pol_Rpb1_3 TFIIS_C
RNA_pol_Rpb1_4 TFIIS_C
RNA_pol_Rpb1_5 RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb1_6 TFIIS_C
RNA_pol_Rpb1_7 RNA_POL_M_15KD
RNA_pol_Rpb2_1 DNA_RNApol_7kD
RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb2_2 RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb2_3 TFIIS_C
RNA_pol_Rpb2_4 TFIIS_C
RNA_pol_Rpb2_5 TFIIS_C
RNA_pol_Rpb2_6 DNA_RNApol_7kD
TF_Zn_Ribbon
TFIIS_C
RNA_pol_Rpb2_7 TF_Zn_Ribbon
Spt4 KOW
Spt5-NGN
Spt5-NGN Spt4
TFIIE_alpha TF_Zn_Ribbon
Topo_Zn_Ribbon Topo_Zn_Ribbon
Trm112p MTS
Trm112p
ubiquitin Ribosomal_L40e
Ribosomal_S27
zf-RanBP
zf-CHC2 Toprim_N
zf-CHC2
zf-dskA_traR zf-dskA_traR
zf-NADH-PPase NUDIX
NUDIX-like
zf-NADH-PPase

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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