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543  structures 1914  species 52  interactions 49367  sequences 552  architectures

Clan: MBB (CL0193)

Summary

Outer membrane beta-barrel protein superfamily Add an annotation

This clan gathers together a large set of beta barrel membrane proteins.Although these proteins have different numbers of beta strands in the barrel they have significant sequence similarity between families.

This clan contains 65 families and the total number of domains in the clan is 49367. The clan was built by A Bateman.

Members

This clan contains the following 65 member families:

Ail_Lom Autotransporter Bac_surface_Ag BBP2 BBP2_2 Campylo_MOMP Channel_Tsx CopB DUF2490 DUF2860 DUF3078 DUF3138 DUF3187 DUF3575 DUF481 DUF5020 DUF560 Gcw_chp HP_OMP HP_OMP_2 KdgM LamB Legionella_OMP Lipoprot_C MDM10 MipA MSP MtrB_PioB Omp_AT OMP_b-brl OMP_b-brl_2 OMP_b-brl_3 OmpA_like OmpA_membrane Omptin OmpW Opacity OpcA OprB OprD OprF OstA_C PagL PagP Phenol_MetA_deg Porin_1 Porin_10 Porin_2 Porin_3 Porin_4 Porin_7 Porin_8 Porin_O_P Porin_OmpG PorP_SprF ShlB Surface_Ag_2 TcfC Toluene_X TonB_dep_Rec TraF_2 TSA Usher YfaZ YjbH

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
TonB_dep_Rec (PF00593) 15820 (32.0%) View
Bac_surface_Ag (PF01103) 4241 (8.6%) View
OMP_b-brl (PF13505) 3293 (6.7%) View
Porin_4 (PF13609) 2258 (4.6%) View
Porin_3 (PF01459) 2142 (4.3%) View
OMP_b-brl_3 (PF14905) 2053 (4.2%) View
OMP_b-brl_2 (PF13568) 1724 (3.5%) View
Autotransporter (PF03797) 1522 (3.1%) View
Toluene_X (PF03349) 1172 (2.4%) View
OprB (PF04966) 1012 (2.0%) View
Porin_O_P (PF07396) 859 (1.7%) View
Usher (PF00577) 813 (1.6%) View
OstA_C (PF04453) 799 (1.6%) View
PorP_SprF (PF11751) 783 (1.6%) View
Phenol_MetA_deg (PF13557) 717 (1.5%) View
MipA (PF06629) 659 (1.3%) View
OmpW (PF03922) 620 (1.3%) View
OprD (PF03573) 589 (1.2%) View
DUF481 (PF04338) 584 (1.2%) View
Gcw_chp (PF09694) 517 (1.0%) View
PagL (PF09411) 489 (1.0%) View
DUF3575 (PF12099) 450 (0.9%) View
ShlB (PF03865) 369 (0.7%) View
DUF2490 (PF10677) 339 (0.7%) View
CopB (PF05275) 334 (0.7%) View
BBP2_2 (PF10082) 328 (0.7%) View
MDM10 (PF12519) 319 (0.6%) View
DUF3078 (PF11276) 315 (0.6%) View
BBP2 (PF07642) 311 (0.6%) View
Porin_1 (PF00267) 296 (0.6%) View
LamB (PF02264) 280 (0.6%) View
YjbH (PF06082) 278 (0.6%) View
Porin_2 (PF02530) 263 (0.5%) View
continued
Pfam family Num. domains Alignment
OmpA_membrane (PF01389) 259 (0.5%) View
DUF560 (PF04575) 249 (0.5%) View
Porin_10 (PF14121) 230 (0.5%) View
Channel_Tsx (PF03502) 212 (0.4%) View
MSP (PF01716) 211 (0.4%) View
HP_OMP (PF01856) 202 (0.4%) View
Surface_Ag_2 (PF01617) 145 (0.3%) View
TraF_2 (PF13729) 118 (0.2%) View
YfaZ (PF07437) 112 (0.2%) View
KdgM (PF06178) 107 (0.2%) View
PagP (PF07017) 102 (0.2%) View
Omptin (PF01278) 81 (0.2%) View
DUF5020 (PF16412) 76 (0.2%) View
TcfC (PF16967) 75 (0.2%) View
HP_OMP_2 (PF02521) 71 (0.1%) View
MtrB_PioB (PF11854) 66 (0.1%) View
Porin_7 (PF16956) 65 (0.1%) View
DUF3187 (PF11383) 53 (0.1%) View
DUF2860 (PF11059) 48 (0.1%) View
Porin_8 (PF16966) 42 (0.1%) View
Legionella_OMP (PF05150) 40 (0.1%) View
Opacity (PF02462) 37 (0.1%) View
OprF (PF05736) 34 (0.1%) View
Lipoprot_C (PF08794) 32 (0.1%) View
Ail_Lom (PF06316) 31 (0.1%) View
DUF3138 (PF11336) 30 (0.1%) View
Campylo_MOMP (PF05538) 29 (0.1%) View
OmpA_like (PF16961) 20 (0.0%) View
Omp_AT (PF11557) 16 (0.0%) View
Porin_OmpG (PF09381) 13 (0.0%) View
TSA (PF03249) 9 (0.0%) View
OpcA (PF07239) 4 (0.0%) View
Total: 65 Total: 49367
No alignment ℹ
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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