Sequence alignment for CL0196

PF14709

DND1_HUMAN/253-333QGARA---TLQL-LCQRMK------LGSPVFLTKCLGIGPAGWHR.FWY---QVVIPGHPVPFSGLIWVVL..TLDGRD-
D3ZQ06_RAT/253-333QGARA---ALQQ-LCQRMK------LGCPVFLTKCLGTGPAGWHR.FWY---QVVIPGHPVPFSGLIWVVL..TSDWQD-
E1CFV2_MISAN/284-364RDAAS---QLKW-LCEVNK------LGTPRYEARYNHIGPDGFLY.FTY---KVMIPALSFPLYGSVQILP..GTSARA-
Q28I69_XENTR/276-357LSAVA---CLNI-LCLKMK------LGYPVFLIKLFSVTSFGWLR.FWY---QVVIPRYPTPFCGYSWIIG.ENLELNE-
Q4T7Z0_TETNG/459-537KPAPQ---VLEE-LCQKNN------WGQPVYQLH.SAIGPDQRQL.FLY---KITIPALATQYPN.VHPFT..PTKLCA-
E7F6B7_DANRE/445-523KHAPQ---ILED-ICQKNN------WGQPVYQLH.SAIGPDQRQL.FLY---KVTIPALATQYPN.IHPFT..PAKLCA-
DND1_DANRE/323-403LDAVS---HLQW-MCEVNR------LGSPQYEVHFHHAAPDGFLY.FAF---KVLIPGLPLPLYGFVQILP..GTSARA-
A1CF_PONAB/437-515KLAPQ---ILEE-ICQKNN------WGQPVYQLH.SAIGQDQRQL.FLY---KITIPALASQ.NPAIHPFT..PPKLSA-
C7DQU6_ORYLA/286-366VSPVL---LLRK-LSEASG------WGDPHYEMLFSHAGPDGFLY.FTY---KVHVPGAPTTFRGFVMILP..GHCTST-
C3YRR8_BRAFL/435-513KSAPQ---MLEE-MCQKNQ------WGSPVYSLH.STMGPGERQL.FLY---KVTVPALASQY.PSAQPFQ..PTKLAP-
Q4T4A7_TETNG/266-345TSPTM---LLDY-LCRKNG------FGRPHCEISCHHAEPDGYLH.FSY---KVFNRGMNT.LEGVIMILP..GVTAAS-
C3YRR7_BRAFL/394-475KSAVQ---VLEE-LCRKNQ------WGNPQYTLHSTHTSGQNFRQLFLY---KINVPGYSSGSPGPNTPFT..PNKLAP-
A7RPQ1_NEMVE/331-403KKSQE---ILED-VCQKNQ------WGSPVYTLH.STLGPQEVQL.FLY---KVSIPGLATQYQ.........PPKLCR-
E2RTF9_CANFA/321-397NSAVM---HLDY-YCNKNN------WAPPEYYLY.STTSQDGKVL.LVY---KIVIPAIAN...GSQSYFM..PDKLCT-
RBM46_XENTR/391-467HSAVM---HLEY-FCYKNN------WSFPEYYLY.STTGQDGKML.LAY---KVILPAITG...NTNSYFM..PDKLCS-
F1QVM6_DANRE/447-517KHPVS---ALME-MCNKKK------WPQPEFVMV.HHSGPDHRKN.FLF---KVVVNGSDYQ...........PQSASP-
E2BN98_HARSA/817-887KHPVS---LLGE-YCSKKK------LGAPVYDLC.FECGPDHRKN.FLF---KVKVNGIEYK...........PSVASP-
B3KRA1_HUMAN/490-560KHPVS---ALME-ICNKRR------WQPPEFLLV.HDSGPDHRKH.FLF---RVLINGSAYQ...........PSFASP-
D7MKV0_ARALL/245-320TDGRG---KLIE-ICTKNK------WPRPIFSVE.EERGPKNEQK.FVC---SVKIEIPNI..EGSFHMKG....DAKS-
E4XFI5_OIKDI/156-232LNSFQ---LLEE-ICKLNS------LGSPVYQLHSCQVGAKV..L.YLC---HITLANGST....LNQMVTRSGCRWSS-
F1NJQ8_CHICK/321-397SSAVM---RLDY-FCYKNN------WLPPEYYLY.STTSQDGKIH.LVC---KVLIPSIAD...GSQSCFM..SHKLCT-
D8TGH0_SELML/157-232AFTRQ---TLND-ICLQRQ------WPMPQYRLL.SESGPAHAKR.FTY---TVRVNTRER...GWTDECE...GQAMP-
D7KX33_ARALL/95-172GSAKS---VLHE-ICASKR------WRPPVYECC.KVDGPCHLRL.FTY---KVVVEIIESSGKTVLECFG....DPRR-
F1RBR1_DANRE/378-450SSAVS---LLDY-YCHKND------WSLPEYHLY.SLAGQEGKVM.LIY---KVVISSTRRS.......FM..PDKVCT-

PF00035

Q7Q4V6_ANOGA/391-453--PKS...KLYL.HAVRNG.......LPRAQYEVQQKD....K.L-FRA...TIRF........DG.QRYT....SSFW.
Q7QHX6_ANOGA/116-173--AIV...ALHE....LQG......PGMTEFTINTNGQETK....-..A...ELVI........NN.VRY.....EATA.
RTL2_ARATH/232-292--PVS...MLFK.LCHKHK......KRIDIKNWKDGNVSIA....-......VIYL........DD.ELLA....SGRA.
RTL2_ARATH/314-385--AKT...KLNE.ICLKKK......WPKPIYSVEEDRSSVQGK.R-FVC...SAKIKI....TEEK.TLYM....KGDE.
O57186_9POXV/118-182--PVT...IINE.YCQITK......RDWSFR.IESVGPSNS.P.T-FYA...CVDI........DG.RVFD....KADG.
O17113_CAEEL/12-77--PVA...QLNE.YAQKFY......KKYPTFEFVKEQAVGKHR.V-FII...QATF........ED.KTL.....EGRG.
Q6BX76_DEBHA/469-531--AKN...ELYSILGKNMG......TIPIYEIYEMSSK......Q-FRA...ELKV........KG.IHVA....TAVD.
DCL2B_ORYSJ/1303-1365--PVK...GLQE.FCDRRS......FKITYEKNHVDGVS.....S-VIA...RVKA........GE.TTYS....ATKS.
DCL3B_ORYSJ/1416-1479--PYR...ELLE.LCSHIG..........CFLNSKCTSKGEEV.I-IEM...SLQL.......RDE.LLVA....QGHD.
ADAD1_HUMAN/97-162--PVS...ALHQ.FAQMQR......VQLDLKETVTTGNVMG.P.Y-FAF...CAVV........DG.IQYK....TGLG.
RNC_BACTN/174-240--FKS...KLIE.WSQKNK......MEVSFELIEQFLDHDSNP.V-FQT...EVRI........EG.LPAG....TGTG.
RNC_BIFLO/167-234--WKT...SLTV.KAHGLG......KEEPVYHMEVSGPEYA.Q.I-FTA...RVSLG......ENG.DIIG....IGKG.
Q5BZE9_SCHJA/177-241--PKQ...ILSE.HCKLLK......WDSPKYETVENREK...R.S-FFS...AVLV........DG.RRYR...NTSSC.
RNC_RHOBA/186-252--HKS...VLQQ.FAQREL.....SATPVYKLIRETGPDHR.K.M-FLM...GAMV........DD.RRFA....PAWG.
STAU2_DANRE/308-373--PIS...RLAQ.IQQAKK.....EKEPEYMLLSERGMPRR.R.E-FIM...QVKV.........G.TEVT....TGTG.
STAU2_DANRE/9-73--PMC...LVNE.LARFNR......IQPQYKLLNEKGPAHA.K.I-FTV...QLCL........GN.QVW.....ESEG.
DHX9_MOUSE/183-252--AKA...RLNQ.YFQKEK......IQGEYKYT.QVGPDHN.R.S-FIA...EMTIYI...KQLGR.RIFA....REHG.
STAU2_DANRE/208-272--EIS...LVYE.IALKRN......LPVNFEVLKESGPPHM.K.S-FLT...RVTV........GE.FSA.....EGEG.
STAU2_DANRE/130-179--FRG...MFNQ....RYH...............YPVP....K.V-FYV...QLTV........GN.NEF.....IGEG.
STAU2_DANRE/494-555--PSQ...QLEY.LAHIQG......FQVQY....SDRQTDK...E-FMT...YLTLS......PVQ.MTF.....HGIG.
DHX9_MOUSE/4-69--IKN...FLYA.WCGKRK......MTPAYE..IRAVGNKNRQ.K-FMC...EVRV........EG.FNYA...GMGNS.
Q7TMI8_MOUSE/667-738--PKS...QLQQ.CCLTLRTE.GKEPDIPLYKTLQTVGPSHAR.T-YTV...AVYF........KG.ERIG....CGKG.
Q869Z1_DICDI/365-439--SKG...FLNQ.YMIKLG......KRPNDQYISSTSHGLPPNQT-FET...ILELPFPTHLGRDS.MKI.....TGKG.
RNC_PARUW/173-239--WKA...LLQD.YCQKNY.....QQTPLYQVLHESGPDHS.K.V-FQI...SVWI........QD.RELG....RGKG.
RNC_AQUAE/152-217--YKT...ILQE.ITQKRW.....KERPEYRLISVEGPHHK.K.K-FIV...EAKI...........KEYR...TLGEG.
Q56Y50_ARATH/613-685--TRQ...TLNDICLRKNW......PMPSYRCVKEGGPAHAKRFT-FGV...RVNT........SD.RGWTD.ECIGEP.
DRB1_ARATH/102-168--CKN...LLQE.YAQKMNY...AIPLYQCQKVETLGRVT....Q-FTC...TVEI........GG.IKYT....GAAT.
Q869Z1_DICDI/532-606--AKR...KIEQ.YCKQFG......YPENNVYRSHETSRGSLM.K-FSK...TFVV........EM.YLPI....QGVVQ
Q7Z6F6_HUMAN/101-165--YMG...LINR.IAQKKR......LTVNYEQCASGVHGPE...G-FHY...KCKM........GQ.KEYS....IGTG.
Q56Y50_ARATH/515-575--PVR...ELQE.RCQQQA......EGLEYKASRSGN.......T-ATV...EVFI........DG.VQVG....VAQN.
Q95YG3_DROME/1653-1717--PIN...HIRQ.LVEHKH......AKPVFGSPIVEGGTVMVSCQ-FTCMEKTIKV...................YGFG.
340R_IIV6/31-100--SIG...FLNE.FCHKNK.....YKPPSYTTLNQNGPDHS.P.T-FNI...ECRIVD...YKPNG.KFIG....SGLS.
NSP3_ROTBS/336-400--ALV...KLND.CITKYN......LKIICTFDVNLDDDGS.I.M-YIC...YLKV.........G.SAEA....TGNG.
Q600P3_MYCH2/114-177--PKS...IFQE.KIQTFS......TSNKIHYLHTKLVDG....T-FRV...DLIW........EK.KKYG....IGYG.
RNT1_YEAST/370-435--AKR...QLYS.LIGYAS........LRLHYVTVKKPTAVDP.N-SIV...ECRV.......GDG.TVLG....TGVG.
RNC_FRATT/154-221--SKS...KLQEILLQNAL......SLPEYSIETIDGKDHE.Q.Q-FTV...VAVS........KDLNLRV....KAQG.
Q8GY53_ARATH/347-409--SKS...QLQT.ILTRAGY...TVPMY......KTKQLKN.N.K-FQT...TVEF........NE.TQIM....GQPC.
Q8EW40_MYCPE/166-233--YKS...RIQELFQYNIA......KKHKKAHFYYQTVEIENN.M-FKS...SLIY........DE.IIYG....VGVG.
Q7T6C0_9POXV/109-174--PVS...AVNE.FCMITH......RPLEFCETRSGGQDHC.P.N-FTC...TIMV........SG.KVIA....TADG.
PRKRA_HUMAN/35-99--PIQ...VLHE.YGMKTK......NIPVYECERSDVQIHV.P.T-FTF...RVTV.........G.DITC....TGEG.
Q01HF5_ORYSA/1517-1590--ARS...FLFELCAANYW......KPPEFKLCKEEGPSHLRKFT-YKV...VVEI........KG.ASATLLECHSDG.
Q5MNU4_XENLA/216-278--GIR...SAYNYNMRGGG......YPPRYFYPFPVAPI.....L-YQV...ELSV........GG.QQF.....HGKG.
Q5A694_CANAL/398-462--AKS...KLYG.LIGQDD........LHPVYNTLQMGDGIHN.K-FIV...QCTI........NG.EELG....RGTA.
Q8V3R2_SWPV1/105-169--PIT...VLNE.YCQIT.......QRDWIIDIISSGQSHC.P.I-FTA...SITV........SG.IKCK....TGKG.
A8XWE5_CAEBR/360-423--PKM...VLHDYLVETKT......PKATYETVKREDK......R-FVS...TAII........GD.KKFR....SGIG.
DHX30_CHICK/292-359--PKN...LLAQ.VIQIATSSSTVKEYMQFRTVGTKTKICKLTLR-WPC...PMTF...................AAKG.
RNC_BRAJA/176-242--PKT...VLQE.WAQGKG.....LPTPVYREVERTGPHHD.P.Q-FRV...AVDL........PG.LAPA....EGIG.
RNC_MIMIV/177-246--YKD...LLLR.YFHQMKW...GHPKYIEEIVIDPKNNQRNK.F-ISK...VKNP........FD.KVIG....IGSA.
RNC_HAEDU/153-220--PKT...RLQE.FLQGRR.....LKLPEYEVLDIKGEAHN.Q.I-FKV...SCKI........ETFTDIF....IGIG.
Q5A694_CANAL/532-594--AKN...KLYGILGRKIG......DKPAYLTSQINGN......L-FKV...VLCI........RG.ITIC....ETTD.
Q75UT8_CHICK/100-165--YIS...LLNK.YSQKTL......QLVDYNNINRTGDPHA.P.M-YSC...SCVI........SG.HVYG....NGKG.
Q9YWP6_9REOV/4-69--VKG...MLQE.LCVKRG......LELPVYEKLSKVGPDHAP.T-ITV...KLTA........NG.IEVI....EAAS.
TRBP2_DANRE/140-205--PVG...ALQELVVQKGW......RLPEYTVTQESGPAHR.K.E-FTM...TCRV.........E.RFVE....IGSG.
Q9I8Y0_TETFL/630-695--PVS...VLMD.YSQHSG......NAIEFIMTGQAGPPHD.T.R-FMY...RVKV........GE.NLFS....EASA.
YOT2_CAEEL/276-348--PKK...ALQK.FFEREG......FDMNFEFSEQGQGHTH...K-WVC...SIELPVEIDGVDRA.FTAS....ATVS.
RNC_CAEEL/985-1057--AKS...HLQQ.WCLAMRDPSSSEPDMPEYRVLGIEGPTNNR.I-FKI...AVYY........KG.KRLA....SAAE.
Q01HF5_ORYSA/1332-1396--PMR...ELRE.LCQCHG......FELGLPKPMKADGEY....H-VKV...EVNI........KS.KIII....CTAA.
Q7XUL7_ORYSJ/830-896--SVA...ALKE.LCTVEG......YNLVFQEQPSRPRGSSGK.E-AYA...QVEI........GG.QILG....KGVG.
Q9RS46_DEIRA/28-93--AKG...DLIA.RLVSLG......LGTPTFEAEAHGPAHER..T-FHV...KVWS........SG.QVIA....TAEG.
Q865A3_BOVIN/10-75--YIE...ELNK.YQQKNG......VEVRYCELAKTGPPHN.F.R-FTY...QVII........DD.KEYP....KAEG.
ADAR_DROME/210-270--PVM...LLYELF...........NDVNFECINIDGAQNNC..R-FKM...TVTI........NE.KKF.....DGTG.
RNC1_NOSS1/154-221--SKN...RFQE.WVQRNIG....PTPPKYLTEQIGGFSHA.P.E-FKA...TVLV........GE.KEYG....EGIG.
TRBP2_DANRE/274-339--FCS...LLRE.LSEEQR......FGVSYL...DIEERSLSG.L-YQC...LVELSTQ..PITVC.........HGFA.
DCR1_CAEEL/1769-1829--PIR...ELME.............FEQSKVRFSKMERILESG.K-VRV...TVEV........VN.NMRF....TGMG.
Q5K7L9_CRYNJ/462-534--AR....QFMEYYCHRYRFRKPDVEYTQTTVKDPQNKKKTKM.V-WEG...VIIV........GN.RRIG....MGSG.
RNC_MESFL/158-226--YKS...ELQEIIQAEIR......SDLEYRVESQKHIEKDNKIE-YTV...SVNL........DG.KKYG....IGTG.
ADR2_CAEEL/37-103--PMS...LFSELYVHMTG......NTPVFDFYNRNQPNGS.M.K-FIC...VVIL........NG.ERIE....GNVK.
Q9VLW8_DROME/6-67--AVS...ALQE.FCARTQ.....INLPTYSFIPGEDG......G-YVC...KVEL...........LEIE...ALGNG.
Q59A30_BOVIN/2049-2116--PVS...ALME.ICNKRR......WQPPEFLLVHDSGPDHRK.H-FLF...RVLI........NG.SAYQ....PSFA.
DRB4_ORYSJ/129-193--SKS...ILHE.YTTKTK.....TDQPEYSVTKTEGSVT....P-YVS...SVSF........AG.HTYT....GGAA.
RNC_CORGL/177-242--WKT...TLQEELAQRKR......PMAEYSAT.SVGPDHD.L.V-FTA...IVTL........EG.EEMG....RGEG.
STAU_DROME/485-555--QRPFPPKFPSRFALPPPLGAHVHHGPNGPFPSVPTPPSKIT.L-FVG...KQKF...................VGIG.
POLN_DCVEB/24-88--KIS...TLKM.VADYYQ......KEVKYDFDAVESPREAP..V-FRC...TCRF........LG.YTIM....TQGI.
Q5K7L9_CRYNJ/338-405--PKS...PVANFILKGKS......GDISGTYSYTEGIVDGKK.V-HRV...TMTP........AN.GIYG....IGDS.
Q9SUC1_ARATH/12-73--KEM...ILQK.FG..........VKAIYRIEEVHVSSND.C.L-YRC...HLQL........PE.FSVV....SNVF.
Q581T1_TRYB2/1025-1093--AKT...VLQR.YCNVAN......VNYPTFWKSRTVGPISCR.V-CLT...TIEV........PG.HEYL....RASG.
ADAD2_HUMAN/116-179--AVS...LLTE.YAASLG.........IFLLFREDQPPGPCF.P-FSV...SAEL........DG.VVCP....AGTA.
RNC_CHLTR/161-227--PKN...RLQQ.FTQQTL......KVLPSYKALPWKSEDGSP.G-YHV...QVFV........NG.DLWG....EGFA.
Q8MRY4_DROME/109-170--SKDALMVLNE.............LKGVTVDNMQIKRDHE.G.K-IMA...HVVV........NS.KKYE....AEGS.
O12982_XENLA/575-640--PVS...GLLE.FTHYCS......QQCDFALLNQSGPSHD.P.R-FKI...QAVI........DG.RRFP....VAEA.
DHX9_CAEEL/172-242--SKK...ALNE.FLQKMRLPQVNYGTKIRESNTVKTMETTAQ.I-FVP...QI..........NK.NLVG....KGTG.
Q8PZF0_METMA/537-601--PIF...ALQE.YCQAKKL...PLPAYSF....EMEGATNRP.I-FTC...TCTF.........G.SSTS....TGQA.
Q8MRY4_DROME/243-306--NMHPCMVLNY.............MRPQCTFIVSGGTGTNQNNT-FSM...SVCV........DN.CEFN....AEGP.
A464_PBCV1/202-267--YKD...RLLKHTRKVEL......PRPEFVSVFEKGGANP...S-FIV...DVVI........NG.QKIS....TGTG.
RNC_LACPL/162-228--YKT...TLQE.YLQRDG.....DVAIDYQLIEQDGPANE.R.S-YEI...AVLA........DG.QKIG....EGWG.
Q9VLW8_DROME/96-161--MVK...ELRD.YCVRRE......MPLPCIEVVQQSGTPSAP.E-FVA...CCSV.........A.SIVR....YGKS.
O43263_HUMAN/79-142--PKN...ALMQ.LNEIK.......PGLQYTLLSQTGPVHA.P.L-FVM...SVEV........NG.QVF.....EGSG.
DRB5_ARATH/2-68--YKN...QLQE.LAQRSC......FNLPSYTCIREGPDHA.P.R-FKA...SVNF........NG.EIFE....SPTY.
Q86L44_DICDI/2-75--TKN...DLQT.YIQQKR......IGYLPVYHSECRGPDHER.E-YRT...HIRVGEI.NSKHNN.KIVY....SDWY.
DGCR8_HUMAN/512-576--EVC...ILHE.YMQRVL.....KVRPVYNFFECENPSE....P-FGA...SVTI........DG.VTYG....SGTA.
Q86GC2_CAEEL/457-528--PCA...LLHAMLNKQTKQKCKIAYEFKDNVPPVAGQATT...T-FYC...ECVI........DE.TDRY....IGVG.
Q7U9V1_SYNPX/164-231--GKT...TLQE.WSQGQG......LGLPEYSTEERSQVHGDPQR-FRS...TVRV........AS.KVLA....EGHG.
RNC_MIMIV/469-535--YKD...LILQ.LYNKNK......WGHPVYKILKEEGPDHCK.I-FTM...GLYL........GN.KLMG....IGKA.
NSP1N_ROTJ1/329-393--YIQ...LLNE.HSQRYG.......FVQPTYEIIAVVSDGHH.S-YQC...TCYY........KD.MKTQ....STGP.
PAC1_SCHPO/291-354--AKS...KLFHKYSTLGH........IEYRWVDGAGGSAE...G-YVI...ACIF........NG.KEVA....RAWG.
Q7XUL7_ORYSJ/704-767--SAG...VLEE.IAVECG......FKVEYQSTLCSTAEL....Q-FSI...EVRI........LG.EKVG....EGIG.
Q677S7_9VIRU/173-232--PKT...RLKE.LTDKHK......TELGLPDYTHSGNKT.....-......ECYV........GG.ELLA....VVYG.
DRB1_ARATH/16-82--FKS...RLQE.YAQKYK......LPTPVYEIVKEGPSHK.S.L-FQS...TVIL........DG.VRYN....SLPG.
O55319_BPAPS/2163-2227--PIS...ACLE.LISKLK......TAGPVEHFERAGPPHS.P.T-YSC...TVTY........AG.RHFG.....GEG.
RTL3_ARATH/581-643--PFL...MLFR.LADKHG......KQIDFRYSKDGGSRKN....-.IA...QVYM........DD.MFIA....SGCA.
Q75UT8_CHICK/5-70--CMA...KINR.YCQKNK......YKLDYVDVDMRGPSHD.P.E-FEV...VVKI........NG.VKYG....TGVG.
DRB1_ORYSJ/2-69--YKS...RLQE.LCQQRR......WAPPEYTHRCAGPAHA.P.L-FGA...TVSV........NG.VEFRTPEDAARS.
DGCR8_HUMAN/620-684--PYQ...ILHE.CLKRNH......GMGDTSIKFEVVPGKNQK.S-EYV...MA..........CG.KHTV....RGWC.
Q86GC2_CAEEL/114-172--PAM...LLHE.LFKDVS.............EEYTEVEGVPK.K-YCC...TLKV........NG.RTFQ....MESV.
Q5A6B8_CANAL/317-379--ARN...DLYSKLGKAKI......ATPEYEDKISPEK......V-YHV...LVSA........KG.IYLG....GGYD.
RM03_SCHPO/217-284--PRR...QLSR.LCKRLS.....LKEPVYRIIAETGRKSREP.V-FVI...GAYS........GH.HLLG....QGQA.
RNC_UREPA/167-229--YKT...IFQE.QAQRIN......KKPIMYKLVRNEGDKKEV..-......HLVW........ND.LIYG....IGIA.
Q83VA6_9MOLU/154-219--FKT...QLQE.LVQTKK......QNITYKIISEKGLAHE.K.E-FVS...EVYL........GK.EWLG....KGNG.
Q6Q1D2_9REOV/3-67--PVS...VVHN.FARSQG......LPLNFETVGCEGPSHDPR..-FVI...ECKL........LD.FQHQ....CTDS.
DRB5_ARATH/88-153--YKN...LLQE.TAHRAG......LDLPMYTSVRSGSCHF.P.G-FSC...TVEL........AG.MTF.....TGES.

PF00333

RS2_YEAST/75-141--------GLQD-------------EVMNIKPVQKQTRAGQRT-R-FKA---VVVV-------GDSNGHVG----LGIKT
RS5_SHIFL/10-76--------ELQE-------------KLIAVNRVSKTVKGGRIF-S-FTA---LTVV-------GDGNGRVG----FGYGK
RR5_CYAPA/16-82--------DWQE-------------RVVQIRRVSKVVKGGKKL-S-FRA---IVVI-------GNERGQVG----VGIGK
RS2_CRIGR/41-107--------SLKD-------------EVLKIMPVQKQTRAGQRT-R-FKA---FVAI-------GDYNGHVG----LGVKC
RS2_DICDI/88-154--------NLKD-------------EVMKIVPVQKQTRAGQRT-R-FKA---FVVV-------GDHNGHVG----LGVKC
RS5_BUCAK/10-76--------ELQE-------------KLIAVNRVSKTVKGGRIF-S-FTA---LTVV-------GDGNGRVG----FGYGK
RS5_GEOSE/10-76--------ELEE-------------RVVAVNRVAKVVKGGRRL-R-FSA---LVVV-------GDKNGHVG----FGTGK
RS5_CHLTR/12-78--------QLEE-------------KVLVVNRCCKVVKGGRKF-S-FSA---LILV-------GDRKGRLG----FGFAK
RS5_HALMA/47-113--------DLED-------------EVLDINMVQRMTDSGRRV-K-FRC---VVAV-------GNRDGLIG----YAEGR
RS5_METVA/56-122--------DLEE-------------QVLDVKLVQRMHKSGRRA-R-YRA---TVVV-------GNKNGYVG----VGMGK
RS5_MICLU/10-73--------QFLE-------------RVVGINRVSKV..G.RRF-S-FTA---LVVV-------GDGDGTVG----VGYGK
RS5_MYCCT/44-110--------EFEE-------------KVVTIRRVTKVTKGGRHF-R-FAA---VVVV-------GNKKGLVG----MGTGK
RT05_YEAST/143-210--------KLTM-------------KPLVMKRVSNQTGKGKIA-S-FYA---LVVV-------GDKNGMVG----LGEGK

PF14709

DND1_HUMAN/253-333--------GH-EVAKDAVSVRLLQALS
D3ZQ06_RAT/253-333--------GH-EVAKDAVSAQLLETLS
E1CFV2_MISAN/284-364--------MK-GEVHRATAEQVIQTIY
Q28I69_XENTR/276-357--------KY-DNAREVVAVKILSALG
Q4T7Z0_TETNG/459-537--------AV-EEAKVHAAEHTLQTLG
E7F6B7_DANRE/445-523--------SM-DEAKLHAAEHTLQILG
DND1_DANRE/323-403--------MK-SEVYRAAAEQVIQTLC
A1CF_PONAB/437-515--------YV-DEAKTYAAEYTLQTLG
C7DQU6_ORYLA/286-366--------ML-EEARRAAAQQVLQKLC
C3YRR8_BRAFL/435-513--------SV-EEAKSVAAEFVLNQLG
Q4T4A7_TETNG/266-345--------TM-EEARRAVAQQVLCKLF
C3YRR7_BRAFL/394-475--------NP-DDAKQYAAEYVLMQLG
A7RPQ1_NEMVE/331-403--------TV-EEAKNYAAEHTLQQLG
E2RTF9_CANFA/321-397--------TL-EDAKELAAQFTLLHLG
RBM46_XENTR/391-467--------FV-EDAKELAAQFTLMHLD
F1QVM6_DANRE/447-517--------NK-KHAKAMAATVALQAMG
E2BN98_HARSA/817-887--------NK-KQAKAEAAQICLQTLG
B3KRA1_HUMAN/490-560--------NK-KHAKATAATVVLQAMG
D7MKV0_ARALL/245-320--------KK-KQAENSSAYHMIRALE
E4XFI5_OIKDI/156-232--------TP-EEAQSLAAEGILALLG
F1NJQ8_CHICK/321-397--------TL-EDARELAARMALLHLV
D8TGH0_SELML/157-232--------SM-KKAKDSAALVLLEVLK
D7KX33_ARALL/95-172--------NK-KAAAEHAAEGALWYLE
F1RBR1_DANRE/378-450--------IL-EDAKELAAQNALWNLD

PF00035

Q7Q4V6_ANOGA/391-453......EKNK.RYAEQAAALVCLLKR-
Q7QHX6_ANOGA/116-173......P.NK.NLAKAQASEKALRDL-
RTL2_ARATH/232-292......E.NK.DIARLIAAKEALRKL-
RTL2_ARATH/314-385......Q.SKIKKAESSSAYHMIRAL-
O57186_9POXV/118-182......K.SK.RDAKNNAAKLAVDKL-
O17113_CAEEL/12-77......P.SK.MIAKRAAAEAILESI-
Q6BX76_DEBHA/469-531......A.TK.KRACSRAAMTIINNK-
DCL2B_ORYSJ/1303-1365......G.PC.KLAKKLASKAVLKDL-
DCL3B_ORYSJ/1416-1479......R.NK.KRAKAKAASRILADL-
ADAD1_HUMAN/97-162......Q.NK.KESRSNAAKLALDEL-
RNC_BACTN/174-240......Y.SK.KESQQNAAQMAIKKV-
RNC_BIFLO/167-234......S.SK.RKAQLAAAEAGWKSL-
Q5BZE9_SCHJA/177-241......K.TK.KYAEQAAALVCLQVL-
RNC_RHOBA/186-252......N.NK.KDAEQRAAANALAEL-
STAU2_DANRE/308-373......P.NK.KVAKRNAAEAMLLQL-
STAU2_DANRE/9-73......S.SI.KKAQHSTATKALAES-
DHX9_MOUSE/183-252......S.NK.KLAAQSCALSLVRQL-
STAU2_DANRE/208-272......N.SK.KLSKKRAALSILQEL-
STAU2_DANRE/130-179......R.TR.QAARHNAAMKALQAL-
STAU2_DANRE/494-555......S.SI.PASHDQAALSALKQL-
DHX9_MOUSE/4-69......T.NK.KDAQSNAARDFVNYL-
Q7TMI8_MOUSE/667-738......P.SI.QQAEMGAAMDALEKY-
Q869Z1_DICDI/365-439......S.SK.NESKTQCAEKACRVL-
RNC_PARUW/173-239......T.SK.KEAQQAAAADALSRV-
RNC_AQUAE/152-217......K.SK.KEAEQRAAEELIKLL-
Q56Y50_ARATH/613-685......MPSV.KKAKDSAAVLLLELL-
DRB1_ARATH/102-168......R.TK.KDAEISAGRTALLAI-
Q869Z1_DICDI/532-606KITITESDNK.KLSENLAAVDACEYL-
Q7Z6F6_HUMAN/101-165......S.TK.QEAKQLAAKLAYLQI-
Q56Y50_ARATH/515-575......P.QK.KMAQKLAARNALAAL-
Q95YG3_DROME/1653-1717......S.NK.DQAKLSAAKHALQQL-
340R_IIV6/31-100......M....KEAKKNAAFKTIKEL-
NSP3_ROTBS/336-400......C.SK.KEAKRRAAVSILDQL-
Q600P3_MYCH2/114-177......R.SI.KEAEFAAATNALNIF-
RNT1_YEAST/370-435......R.NI.KIAGIRAAENALRDK-
RNC_FRATT/154-221......T.SR.KKAEQKTAEKMIEML-
Q8GY53_ARATH/347-409......S.NK.KSAEKDAAAEAIQWL-
Q8EW40_MYCPE/166-233......K.TK.KEAQKSAAKIAYEKY-
Q7T6C0_9POXV/109-174......T.SK.KMARHAACATALIIL-
PRKRA_HUMAN/35-99......T.SK.KLAKHRAAEAAINIL-
Q01HF5_ORYSA/1517-1590......KLQK.KAAQEHAAQGALWCL-
Q5MNU4_XENLA/216-278......R.TR.QAAKHDAAARALKSL-
Q5A694_CANAL/398-462......N.NL.KEAGLRAAMAGLNNN-
Q8V3R2_SWPV1/105-169......S.TK.KEAKQIAARETMNFI-
A8XWE5_CAEBR/360-423......QPNL.RMAEQVAALAALHGM-
DHX30_CHICK/292-359......R.RK.VEAENKAAALACQKL-
RNC_BRAJA/176-242......G.SK.RAAEKVAASVMIERE-
RNC_MIMIV/177-246......S.TK.KKSEQLASQMALTNL-
RNC_HAEDU/153-220......T.SR.RKAEQNAAEQILLKL-
Q5A694_CANAL/532-594......P.SK.KKAMARAAQTLLENE-
Q75UT8_CHICK/100-165......N.SL.AVAKQAAAKEAYEVL-
Q9YWP6_9REOV/4-69........SR.AQAEKLAAATLYEKM-
TRBP2_DANRE/140-205......T.SK.KLAKRNAAAKMLSRI-
Q9I8Y0_TETFL/630-695......P.SK.KAARQLAAEEAVKEL-
YOT2_CAEEL/276-348......T.SK.KDAQIQCALDACRIL-
RNC_CAEEL/985-1057......S.NV.HKAELRVAELALANL-
Q01HF5_ORYSA/1332-1396......NRNS.KAARKFAAQETLSKL-
Q7XUL7_ORYSJ/830-896......A.TW.EQAKLQAADEALGNL-
Q9RS46_DEIRA/28-93......R.TK.KDAERLAAELALREL-
Q865A3_BOVIN/10-75......R.SK.KEAKNAAAKLALEII-
ADAR_DROME/210-270......P.SK.KTAKNAAAKAALASL-
RNC1_NOSS1/154-221......K.NK.KDAEKAAAENALANL-
TRBP2_DANRE/274-339......S.SL.DAARASAAHNALQYL-
DCR1_CAEEL/1769-1829......R.NY.RIAKATAAKRALKYL-
Q5K7L9_CRYNJ/462-534......A.NK.KKAAIQCYLDVTQYL-
RNC_MESFL/158-226......F.SK.QEASQNAAKDCLNKL-
ADR2_CAEEL/37-103......S.KK.KEAKVSCSLKGLEVV-
Q9VLW8_DROME/6-67......R.SK.RDAKHLAASNILRKI-
Q59A30_BOVIN/2049-2116......SPNK.KHAKATAATVVLQAM-
DRB4_ORYSJ/129-193......R.NK.KDAEQKAARAAVKSL-
RNC_CORGL/177-242......P.NK.KLAEQEAAHQAFRKL-
STAU_DROME/485-555......R.TL.QQAKHDAAARALQVL-
POLN_DCVEB/24-88........GK.KNPKQEAARQMLLLL-
Q5K7L9_CRYNJ/338-405......T.NK.KEAEKLAALSSLLQL-
Q9SUC1_ARATH/12-73......K.RK.KDSEQSAAELALEKL-
Q581T1_TRYB2/1025-1093.....VAWNK.EASQRQAAMHALALL-
ADAD2_HUMAN/116-179......N.SK.TEAKQQAALSALCYI-
RNC_CHLTR/161-227......G.SK.KEAEKLAAKQALSTH-
Q8MRY4_DROME/109-170........SV.NSARNAACEKALQEI-
O12982_XENLA/575-640......N.SK.KTAKKDAAALALRIL-
DHX9_CAEEL/172-242......S.NK.KVSEAACAMNIVRQM-
Q8PZF0_METMA/537-601......G.KK.QRAKRLAARAMIYTL-
Q8MRY4_DROME/243-306........SK.KAARYKLSALVCNKL-
A464_PBCV1/202-267......K.SR.KDAEQNASKIALHTM-
RNC_LACPL/162-228......H.SK.KEAEQSAARQAYSQL-
Q9VLW8_DROME/96-161......D.KK.KDARQRAAIEMLALI-
O43263_HUMAN/79-142......P.TK.KKAKLHAAEKALRSF-
DRB5_ARATH/2-68......C.STLRQAEHAAAEVSLNVL-
Q86L44_DICDI/2-75......K.NK.KTAESCCAIKVLNYL-
DGCR8_HUMAN/512-576......S.SK.KLAKNKAARATLEIL-
Q86GC2_CAEEL/457-528......R.SK.KLAKSEAAMQALKKL-
Q7U9V1_SYNPX/164-231......R.SR.KEAEQNAAIAAAQTF-
RNC_MIMIV/469-535......S.SK.KKAEQIASKKMYQNY-
NSP1N_ROTJ1/329-393........SK.KNAKHQAAEQMFRHQ-
PAC1_SCHPO/291-354......A.NQ.KDAGSRAAMQALEVL-
Q7XUL7_ORYSJ/704-767......K.TR.KAAKRQAVNMSLRNL-
Q677S7_9VIRU/173-232......S.NQ.KDREQEGSEKILEIL-
DRB1_ARATH/16-82......FFNR.KAAEQSAAEVALREL-
O55319_BPAPS/2163-2227......P.SK.ASAKTQAYGALRQYL-
RTL3_ARATH/581-643......K.RI.DTAKLLAAEEAIQKL-
Q75UT8_CHICK/5-70......K.SK.KEAKAAAAAKTWDMI-
DRB1_ORYSJ/2-69......A....KEAHNIAAKAAFDHL-
DGCR8_HUMAN/620-684......K.NK.RVGKQLASQKILQLL-
Q86GC2_CAEEL/114-172........NK.KAAKQKCSELVVRDL-
Q5A6B8_CANAL/317-379......L.NK.KLAAQKAAMCALANK-
RM03_SCHPO/217-284......S.SL.NLAEQQAAYNSLISY-
RNC_UREPA/167-229......S.TR.KEAEILAAKNAILKL-
Q83VA6_9MOLU/154-219......K.TK.KAAEQQAAKKALAKI-
Q6Q1D2_9REOV/3-67........SK.KRAIQKICVLISNDL-
DRB5_ARATH/88-153......AKTK.KQAEKNAAIAAWSSL-

PF00333

RS2_YEAST/75-141AKE.VAG-AI-RAGIIIAKLSVIPIRR
RS5_SHIFL/10-76ARE.VPA-AI-QKAMEKARRNMINVAL
RR5_CYAPA/16-82ASD.VIN-AV-KKAAADGKKHVVEVPL
RS2_CRIGR/41-107SKE.VAT-AI-RGAIILAKLSIVPVRR
RS2_DICDI/88-154AKE.VAT-AI-SGAIVAAKLSVIPVRR
RS5_BUCAK/10-76ARE.VPA-AI-QKAMEKARRNMMNVAL
RS5_GEOSE/10-76AQE.VPE-AI-RKAIEDAKKNLIEVPI
RS5_CHLTR/12-78ANE.LTD-AI-RKGGDAARKNLVSINS
RS5_HALMA/47-113DDQ.VGG-AI-QKAIDIAKLNIIDVSR
RS5_METVA/56-122SKE.VGP-AI-RKAIAQAKLSLIKVRV
RS5_MICLU/10-73AKE.VPA-AI-QKAVEEAKKSFFRVPR
RS5_MYCCT/44-110ANE.VPE-AI-KKAIKEAKKNLVSVTL
RT05_YEAST/143-210SREEMSK-AI-FKAHWDAVRNLKEIPR

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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