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106  structures 3491  species 12  interactions 7602  sequences 528  architectures

Clan: CBD (CL0203)

Summary

Carbohydrate binding domain superfamily Add an annotation

This superfamily includes several carbohydrate binding domains. These domains have a beta sandwich structure.

This clan contains 5 families and the total number of domains in the clan is 7602. The clan was built by A Bateman.

Members

This clan contains the following 5 member families:

CBM49 CBM_2 CBM_3 CHB_HEX Cohesin

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
CBM_2 (PF00553) 3896 (51.2%) View
Cohesin (PF00963) 1501 (19.7%) View
CBM_3 (PF00942) 1002 (13.2%) View
CHB_HEX (PF03173) 803 (10.6%) View
CBM49 (PF09478) 400 (5.3%) View
Total: 5 Total: 7602 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 12 interactions for this clan. More...

Interacting families
A B
CarboxypepD_reg Cohesin
CBM_2 CBM_2
Cellulase
CBM_3 CBM_3
Cellulase CBM_2
CHB_HEX CHB_HEX_C
Glyco_hydro_20
Cohesin CarboxypepD_reg
Cohesin
Dockerin_1
Dockerin_1 Cohesin
Glyco_hydro_9 CBM_3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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