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170  structures 18969  species 21  interactions 34401  sequences 479  architectures

Clan: UBA (CL0214)

Summary

UBA superfamily Add an annotation

This superfamily includes domains related to the UBA domain. These domains are often involved in ubiquitin binding.

This clan contains 10 families and the total number of domains in the clan is 34401. The clan was built by A Bateman.

Members

This clan contains the following 10 member families:

CUE DMA DUF1296 RuvA_C TAP_C UBA UBA_2 UBA_3 UBA_4 UBA_5

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
RuvA_C (PF07499) 18303 (53.2%) View
UBA (PF00627) 8094 (23.5%) View
UBA_4 (PF14555) 3212 (9.3%) View
CUE (PF02845) 2843 (8.3%) View
TAP_C (PF03943) 629 (1.8%) View
DMA (PF03474) 362 (1.1%) View
UBA_2 (PF08587) 285 (0.8%) View
UBA_3 (PF09288) 273 (0.8%) View
DUF1296 (PF06972) 240 (0.7%) View
UBA_5 (PF16577) 160 (0.5%) View
Total: 10 Total: 34401 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 21 interactions for this clan. More...

Interacting families
A B
Ago_hook UBA
CUE CUE
ubiquitin
GTP_EFTU UBA
HHH_5 RuvA_C
NAC UBA
Pkinase UBA_2
RuvA_C HHH_5
RuvA_N
RuvB_N
RuvA_N RuvA_C
UBA EF_TS
GTP_EFTU
UBA
ubiquitin
UQ_con
ubiquitin CUE
UBA
UCH UBA
UQ_con UBA
XPC-binding UBA

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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