Sequence alignment for CL0232

PF01106

NFU1_YEAST/157-227IEELIDTRIRPAILEDGGDIDY------------RGWDP-------KT..GTVYLRLQGACTSCS-SSEVTLKYGIESML
O26025_HELPY/13-80VRIVIEK.IRPYLLKDGGNIEV------------LGVKS-------M....KIYVALEGACKTCS-SSKITLKNVIERQL
Q51295_NOSS6/18-86IQKVLDEEVRPVLIADGGDVEL------------YDVDG-------D....IVKVVLQGACGSCS-SSTATLKIAIESRL
YUTI_BACSU/43-110VQEVLDK.LRPFLLRDGGDCEL------------VDVDE-------G....IVKLRLLGACGSCP-SSTITLKAGIERAL
P74558_SYNY3/8-75VETVLDE.LRPYLMADGGNVEV------------VELDG-------P....IVKVRLQGACGSCP-SSTMTLKMGIERKL
Q44483_ANAVA/231-299IQKVLDEEVRPLLIADGGDIEL------------YDVQG-------D....NVQVVLQGACGSCP-SSTATLKVAVEAKL
Q52068_ENTAG/208-274VEEVVAS.LRPHIRADGGDMSL------------VRVDG-------Q....EVTVELSGSCSGCM-MTDMTL.AWLQQKL
NIFU_AZOBR/237-303IMFAIED.WRPQIQRDGGDVEL------------VDIDG-------K....DIYVRLTGACSGCS-QSAGTM.MGVQAKL
NIFU_KLEPN/208-274VVDTIAE.LRPHIQADGGDMAL------------LSVTN-------H....QVTVSLSGSCSGCM-MTDMTL.AWLQQKL
NIFU1_RHOCA/66-132IRALIDE.MRPTFRRDGGDIEL------------VRVEG-------A....KVIVHLSGACAGCM-LAGQTLYG.VQKRI
O29623_ARCFU/7-77VEEVVEKDIRPALMRDGGNIAV------------VDVDE-------GS..GTVKVQLLGACGGCP-MSMITLTSFVERYL
Q21915_CAEEL/131-199IKEILETRIRPMVQEDGGDITY------------VGFDD-------G....VVKLKMQGSCTGCP-SSGVTLKNGIENML
NIFU_AZOCH/234-300IETVLAA.IRPTLQRDKGDVEL------------IDVDG-------K....NIYVKLTGACTGCQ-MASMTL.GGIQQRL
NIFU_ANASL/44-112IQKVLDEEVRPVLIADGGDVEL------------YDVDG-------D....IVKVVLQGACGSCP-SSTATLKIAIESRL
NIFU2_RHOCA/73-139VAELIAE.MRPMFQRDGGDIEL------------IGLTG-------A....TVQVRLSGSCAGCM-MSARTLST.VQHQL
YVN2_AZOVI/28-95VRETVER.LRPGVQRDGGDLEL------------VAVQD-------N....IVRLRLKGACVGCA-MSAQTL.GGVRREL
O09257_CYAP8/226-294IQQILDEEIKPALAKDGGDVEL------------FDVEG-------D....LVKVILQGACGSCA-SSTQTLKMGIEARL
O25009_HELPY/254-326VDKVIDENIRPMLMMDGGDLEI------------LDIKE-------SDDYIDVYIRYMGACDGCM-SATTGTLFAIENAL
NIFU_RHOSH/168-234IAEVIES.VRPRLRADGGDVTL------------VAVEG-------S....KVRVHLTGACSGCQ-LAALTL.GGLQKRL
NIFU_PLEBO/137-205IQKVLDEEVRPVLIADGGDVEL------------YDVDG-------D....FVKVTLKGACGSCA-SSTATLKDAVEAKL

PF01883

C0BLC7_9BACT/5-75KAAVLEA-LSKISAPGEG.VNLVESGAVTN....VQIFG.......D----EVTVDISIANPSLQ......ARKKTEVEV
A2TY07_9FLAO/5-75KQDIYSA-LETITAPGEG.KSLIENNNVTN....VVIFG.......D----EVNVDVTISNPTLQ......AKKKIESEI
Q1VZE4_9FLAO/5-75KDDIKKA-LETITVAGEG.QNIVESGALQN....IVTFG.......D----EVVIDLKLSTPALH......IKKRAEVDV
A6ES74_9BACT/5-75KNTVLEA-LKTITVAGEG.SNMVDSGAVTN....VMIFA.......D----EVIVDLTISTPALH......IKNRAEKDI
A9DKY7_9FLAO/5-75KKDIQAA-LSTITVPGEG.ANMIASGAVRN....IMTFA.......D----EIVVDIVIANPTMQ......AKKKVEADI
C6XF12_LIBAP/6-77KNQIVDS-LKVLSIPGEK.NNIVEMQRLSE....IFIVH.......N----TVYLSITVPHTIAH..QLQSLRSNAQQII
B1XWL9_LEPCP/5-77DSAVRAA-IQTVVDPNTG.RDFISGKQVRN....LSVDG.......A----DVAFDVELGYPARS..QLAGLRKQLIEAV
Q21TC2_RHOFD/5-76EQTLTDA-LKGVLDPNTG.ADFVASKCIKN....LTLTD.......G----DVAFDVELGYPAKS..QIPGIRKALIAAA
A9BV24_DELAS/5-76EQALLAA-LSSVLDPHTG.KDYVSTRALRN....LQVTG.......A----DVAFDVEMGYPAQS..LVPALRGQFVAAA
C7RN83_ACCPU/5-76LEAVQTA-LRELIDPNTR.KDFLSTRSARN....IKVEG.......V----DVALDIELGYPAKT..QVDEIRRTVIAKL
Q2Y7L0_NITMU/5-76EQQIQVA-LREITDLTTG.KDYISTNEARN....IVIEG.......N----NVSLDIVLGYPAKS..VMEDIRAQVIGKL
A4G4Z1_HERAR/5-76IEAVKAA-LSTVIDPNTG.KDLVSSRSAKN....IQING.......T----NVIFDVELGYPAKS..QIDGIRKASIAAV
C9Y8M9_9BURK/14-85EQDITQA-LQSLIDPNTG.ATFSSAKAFKN....IKLQG.......T----DVHLDLELGYPAKS..QWPALVELVSQAA
D5CNX6_SIDLE/5-77EADVQGA-LKSLTDPNTK.RDFVSSKSVKN....IKING.......S----DVSLDILLGYPAKS..VWEDIRGMVETHL
B9Z141_9NEIS/26-97DTQVLQA-LSGLIDDNTG.KPYTAAKAVKN....LRVSD.......S----EIALDVVLGYPAKS..QFDAVRRAFENAL
B4E8D8_BURCJ/5-76RAQVDAA-LAAVVDPNTG.RPYAANKGVRN....VAIDG.......D----VVALDVVLGYPARS..QHDDVRARVAAAL
Q2KYR9_BORA1/5-75IDQIRAA-LRGVSDPITG.LSLGASVKDRD....IHIEN.......G----RVRLLIEQGYPGLA......AQARLAELA
A9I7S3_BORPD/5-75TAQVRAA-LRAVTDPFSG.RELASFVKDSD....ILLDG.......A----AVTVTAILGYPAGF......VAGQLEDAA
B1J1A1_PSEPW/6-77RAAVEGV-LRQYTDPYLN.QDPVSAGCVRA....IDIQG.......G----QVAVQLQLGYAAGL..FKNGWAQVLQTAI
B1HMU4_LYSSC/4-76EQQVREI-LGQLQDPFLH.KSLAETDGITN....VAIKE.......E----KNHVSVKVAIAKLN....TPEQLQLQMKI
Q8TSI9_METAC/146-216EDVVRRR-LKHVMNPLTG.LDIIRTNLILK....ISVEA.......G----VVRVVVDL..PEDH.QFAPAIKEDIIEKL
MRP_DEIRA/2-75NDALLRA-LSTVNDPELH.RDLVSLGMIER....AELSG.......D----VAQVKVNLTTPACP..LKGQIELDVRSAL
MRP_MYCLE/12-86KSAVSTA-LAKVIDPELQ.RPITELGMVKN....IDIEP......GG----NVQVGIYLTIASCP..KKSEISKRVTKAI
O53157_MYCTU/12-89LADVEEA-MRDVVDPELG.INVVDLGLVYG....LDVQD...GDEGT----VALIDMTLTSAACP..LTDVIEDQSRSAL
O06451_STRPN/12-87KTRILTA-LEEVIDPELG.IDIVNLGLIYE....IRFDG.....DTG----QTEIDMTLTTMGCP..LADLLTDQIYDAM
YITW_BACSU/6-80KENIMGA-LEQVVDPELG.VDIVNLGLVYD....VDMDE.....D.G----LTHITMTLTSMGCP..LAPIIVDEVKKAL
Q9RSF9_DEIRA/49-123EAQVLEA-LKVVKDPEIP.VNVVDLGLIYG....VDILE.....D.G----NVDITMTLTSVGCP..VQDLIRADAEMAV
O33779_SULSF/14-88KKKIMEA-LKDVYDPEIP.VDIVNLGLIYD....LKIND.....D.G----DVYLRLGLTAPGCP..VVDDLIYTVEQVI
Q9YAG0_AERPE/19-97LDRIVEA-LKEVYDPEIP.VNVYDLGLIYE....VRVEG...PREKP----RIKVKMSLTAIGCP..VSVALPAYVEDAI
Q9WYV7_THEMA/9-83KEDVLNA-LKNVIDFELG.LDVVSLGLVYD....IQIDD.....Q.N----NVKVLMTMTTPMCP..LAGMILSDAEEAI
O58049_PYRHO/80-154EDEILEK-LKEVIDPEVG.VDVVNLGLIYE....LKVNP.....D.N----TVYIKMTMTTPGCP..LTLWILRAVEEKV
U195A_DROME/36-114KREIFDL-IRNINDPEHP.LTLEELHVVQEDLIRINDSQ.......N----SVHISFTPTIPHCS..MATLIGLSIRVKL
Q9Z9V1_BACHO/6-80REEIIAT-LKTVDDPELPSVSVFDLGMVHS....VDVEQ.......G----LVTVKMIPTFIGCP..ALDMIKKDVKRAV
Q9RRV2_DEIRA/15-88PAAVWAA-LSQVPDPEIPVVSIVDMGMVRE....VKVDG.......E----GVSVTFTPTFSGCP..ALHVIRQSIEDAV
C4ZVD4_ECOBW/14-87VHEIWAL-LSQIPDPEIPVLTITDLGMVRN....VTQMG.......E----GWVIGFTPTYSGCP..ATEHLIGAIREAM
Q9S2E2_STRCO/7-82EVAARAA-LDTVYDPELD.EPVTDLGFVRS....LTAED.......G----RVTVHLRLPTSFCSPNFAYLMASDAKDAL
Y1129_METJA/4-78KEDVLNA-LKTVADPHMG.ISIVDMGLIRD....VEVDD......EG----NVKFKLIPTNPYCM..SVMAMAFQAKEAV
O27700_METTH/17-93LEKVKEA-LKKVADPHMG.ISIVEMGLVEN....IEIED...KGE.T----IAKITIRPTNPGCM..SAARMAMDARNVA
B1X525_PAUCH/5-76TNEALQV-LAVILDEGSR.RSVIELGWISR....LRIQN.......S----RIIFRLELPNFANK..QRDEIVKKARASL
MRP_SYNY3/4-77TDAVLTV-LRPVQDPELQ.KSLVELNMIRD....VAIAG.......G----TVSFTLVLTTPACP..LREFIVEDCEKAV
A9HBK2_GLUDA/6-76RAEIETM-LRQVRDT.AG.TTILDHAALDA....TTLRD.......G----TLHVALATDRAGAG..RIEPLLPQAERAL
C7JG25_ACEP3/9-80SQDIARV-LENVKDPQTG.KNLLAYGHLEG....CSLTE.......G----KLSVAFAVAREHAQ..TISALCNDAARQL
A8II52_AZOC5/35-105EDMVRSA-LGSVRTP.EG.VALAVSPALSG....IVVTS.......G----KVYLSVTVD.AAQA.RAWESVRAEAEDAV
E6VDQ6_RHOPX/5-75QQQILDS-LAKVTTP.RG.VPLTKAGVLSE....IAVTD.......G----KVYFSINVD.AAEA.RAWESVRSDAEAAV
Q3STB4_NITWN/5-75PQQVLDR-LAGVLSP.SG.VALTAAGVLSE....IAING.......D----KVFFSISVE.AEES.KSWEEVRVNAQAAV
E3HZV5_RHOVT/7-77KETVLAA-LKSVRTP.GG.VDLVSAGILSE....IAIVK.......G----KVYFALSVP.PRDA.RAYEAVRREAEETV
B2IDH8_BEII9/4-75DQDVLNA-LGTVLGP.DGKTPLPQSGAIAG....LSIKD.......D----KVYLSIAID.PQQA.GALEPMRAAAEAVV
C7C7U4_METED/5-77RDDVLKA-LSTVTVDRNG.TTLPDSGRLSQ....VVIDP......GN----RVMFSIRID.PSEA.ERFEPVRREAEGRV
A8TM76_9PROT/6-77EEAVREA-LAGVTDPGGA.GGLPVLAAVSG....VVIKD.......G----NIGFALEVD.PARG.PQLEGLRKAAEAAV
B3CM54_WOLPP/11-75EEIVRES-LKKVIEKKSG....KNVGVVSS....IVIKG.......K----DVAFALEVTEPNEE......LRKNCEQAV
B5K864_9RHOB/5-76NETILAA-LKTIGLA.DG.GDLVSRDMIRA....LSITD.......D----KVRFVIEAPDAAMA.GRMEPIRQAAEMIV
Q28NM4_JANSC/5-76RETILDA-LSKIGLP.DG.GDLVSRDMIRA....LMVAD.......G----KVSFIIEAPSPEIA.QQMAGLRDGVQEFV
A4F1C3_9RHOB/5-83KEQVQAA-LARLVLP.DG.GDLVSRDMIRA....LSIADLDGREGVV----KVSFVIEAPSPAIA.QQMEPLRQAAEKMV
Q1GF12_SILST/5-76QEEIRAA-LDRLELP.GG.GTLVSRDMLRA....LSIEG.......S----TVRFVIEAASPEEA.SKMEMLRRAAEASV
A3V6N0_9RHOB/5-76QENIMTA-LARITLP.DG.GDIVGRDMVRA....LTIDA.......G----KVSFVIEAETPAAA.TRLDGVRRAAEQVV
A6FQK2_9RHOB/5-76RDIILRQ-LERLELP.DG.GNIVSRDMVRA....LTIEG.......D----QVRFVIEAPTPDIA.RQMEPLRAAAERAA
Q2CII5_9RHOB/3-74KDTILEA-LARVGLP.DG.GTIVSRDMVRA....LHVEG.......D----SVRFVLEVADPELA.RRMEPVRAAAEAVV
C7D8Q4_9RHOB/5-76RDTVLSA-LSRISLP.DG.GDLVSRDMIRA....LTLEN.......G----SVRYVIEAPTPDAA.RAMEPIRAASEQLV
A3TZA6_9RHOB/5-76RETVIAA-LQKIGLP.DG.GTLVDRDLVRA....LSVEG.......G----TVRFVIEAPSAEMA.RRLGPVRDAAQDAV
C8S462_9RHOB/5-76RDTVLAA-LARIPLP.GG.GDLVSRDLIRA....LVVDG.......G----QVRFVIEAESPDQA.RALEGVQAQAEAAL
A3K0R3_9RHOB/5-76KADVESI-LARVKVS.EG.ETLGSADMIRA....LVVEG.......G----AVRFVIEAPTPERA.KQMEAVRADAEAAV
A9E2W1_9RHOB/5-76KAEVEAA-LERVQLP.DG.KSLLSHDLVRA....LVIDG.......E----KVRFVIEAPNADVA.RQMAPLRDAAEQVV
A3VMX1_9RHOB/6-77RDRVMSV-LATVSMP.DK.GDLASRDMIRA....LTIDG.......G----HVSFIIEAPSPEAA.GAMEPQRKAAESAI
A3JT10_9RHOB/5-76RDSILAA-LANVTTP.AG.NDLTASDRVRA....VSIDD.......G----DVKFVIEVLDSNEA.VLYEGVRTAAEAAI
Q0FF31_9RHOB/5-75VEAIIEE-LKRVQLP.DG.SNIVDSDMVRA....VTIED.......S----KVNFVLEVPG.ELG.ERMEPVRSGAEALI
D0CSC8_9RHOB/4-75RDAVLAN-LKKITDPVSG.QDIVSAGVVRA....LNVEG.......D----TVRFVLEID.PKNA.DKMEPVRATAEKAA
C9CUS6_9RHOB/5-76RDAVLDA-LKTLKDPVSG.GDIVAAGIVRA....LTIEG.......S----NVRFVLEIH.PAKS.EAYAPVRDQAEALV
A3KAX6_9RHOB/4-73REEILEI-LKTVSAP.SG.EDIVAAGVVRA....LGVAD.......S----GVRFVLEVP.PGQA.DKWQPVKTKAEEAL
A3JV53_9RHOB/5-72RESVLTC-LKKIKAP.SG.VDMVEAGLVRA....LNVED.......G----AVRFVMEVDAPAPF....EPAKAEAEAAL
A0NY75_9RHOB/5-76REAALSV-LKTIKDPASG.EDIAASGMMRA....LQVNG.......G----AVRFVLEID.PRRM.AEMEALKTEAETKL
B9R557_9RHOB/5-76RETVIET-LKAVVDPVTG.EDLPATGMIRG....LKVAD.......R----TVRFVLQID.QTRV.DEMERLREDAVQRL
E8RRF9_ASTEC/6-77KQQVLDA-LNTVIDPVSG.QGLVTAGLVRG....LTVSV.......P----RAGFMLEVP.AAQV.ERYAPVREAAEALL
D9QKX8_BRESC/4-75RAAVEAV-LNAIPDPATG.RGLVEAGVPKG....LTVTE.......D----RAGFVIEVP.ADRT.AAYAPVRDAAEAAL
Q1YLS2_MOBAS/6-77KSRILTI-LKAMDAP.DGKGDVVSRDMVSD....IFIAD.......G----KAFFSLSVP.TTEA.ERFEPFCRSIESAV

PF01106

NFU1_YEAST/157-227KHYVD.EVKEVIQI
O26025_HELPY/13-80KMDIH.PNLEVVCL
Q51295_NOSS6/18-86RDRIN.PSLVVVEA
YUTI_BACSU/43-110LEEVP.GVVEVEQV
P74558_SYNY3/8-75REMIP.EIAEVEQV
Q44483_ANAVA/231-299QERVS.QSLRVEAV
Q52068_ENTAG/208-274VERMG.RYIRVVSA
NIFU_AZOBR/237-303VEALG.EFVRVKPA
NIFU_KLEPN/208-274MERTG.CYMEVVAA
NIFU1_RHOCA/66-132TDVLG.RPFRVIPD
O29623_ARCFU/7-77RAKVP.EVKKVVPV
Q21915_CAEEL/131-199TFYVP.EVKEVIEV
NIFU_AZOCH/234-300IEELG.EFVKVIPV
NIFU_ANASL/44-112RDRIN.PSLVVEAV
NIFU2_RHOCA/73-139IETLG.RPVRVVPE
YVN2_AZOVI/28-95VKVLDNPSVRVLPA
O09257_CYAP8/226-294RERVS.PELTVISV
O25009_HELPY/254-326QELLD.RSIRVLPI
NIFU_RHOSH/168-234ADTLG.RPIRVIPE
NIFU_PLEBO/137-205RLRVL.PTLVVQAV

PF01883

C0BLC7_9BACT/5-75LKIIHSEVYEKAKI
A2TY07_9FLAO/5-75TKAIKTNVSEKIEV
Q1VZE4_9FLAO/5-75MKAIHKHVYEKAKV
A6ES74_9BACT/5-75KETIKNKVSSDAKV
A9DKY7_9FLAO/5-75TTVLREKVYADAKV
C6XF12_LIBAP/6-77Q.NIPT..VKNAVV
B1XWL9_LEPCP/5-77RAALPG..VGNVSV
Q21TC2_RHOFD/5-76K.GVAG..VNNVSV
A9BV24_DELAS/5-76K.TVEG..VGNVSV
C7RN83_ACCPU/5-76R.TIPG..IGNVSA
Q2Y7L0_NITMU/5-76K.AIPG..IGSVNA
A4G4Z1_HERAR/5-76R.TIEG..MGSVTA
C9Y8M9_9BURK/14-85R.TVAG..VGTVTV
D5CNX6_SIDLE/5-77RSVLPG..SGKISV
B9Z141_9NEIS/26-97A.PLAE..GRAVKV
B4E8D8_BURCJ/5-76Q.AVPG..VRDARV
Q2KYR9_BORA1/5-75RDALAAVGVDQAEI
A9I7S3_BORPD/5-75RQALAAAGLPGAQV
B1J1A1_PSEPW/6-77E.NLDG..VSSAQV
B1HMU4_LYSSC/4-76VEMLKEAGVNTVGI
Q8TSI9_METAC/146-216G.ALWD..VEKVDV
MRP_DEIRA/2-75LQ.VPGVRDVQIEF
MRP_MYCLE/12-86AD.VPGTAAVEVSL
O53157_MYCTU/12-89VG.SGLVDDIRINW
O06451_STRPN/12-87IE.VPEVTDTEVKL
YITW_BACSU/6-80AD.LPEVKDTEVHI
Q9RSF9_DEIRA/49-123GR.LDGVEGVNVEF
O33779_SULSF/14-88KE.SVPAKSVEVDI
Q9YAG0_AERPE/19-97REAVPEAEDVEVEV
Q9WYV7_THEMA/9-83KK.IEGVNNVEVEL
O58049_PYRHO/80-154LE.IPGVKDVEVEL
U195A_DROME/36-114LRSLPPRFKVTVEI
Q9Z9V1_BACHO/6-80EV.LPWVEVCEVSF
Q9RRV2_DEIRA/15-88R..GLGVNDVEVKS
C4ZVD4_ECOBW/14-87T..TNGFTPVQVVL
Q9S2E2_STRCO/7-82SA.LPGAREVTVLL
Y1129_METJA/4-78KS.LEGVKKVEVTV
O27700_METTH/17-93EQ.VEGIDRAEITV
B1X525_PAUCH/5-76L.LLEG..MKDVQI
MRP_SYNY3/4-77KT.LPGVEKVEVKV
A9HBK2_GLUDA/6-76R.TLPG..VTAASV
C7JG25_ACEP3/9-80E.TLPG..VQSASI
A8II52_AZOC5/35-105R.TIPG..VASALV
E6VDQ6_RHOPX/5-75R.ATPG..VASALV
Q3STB4_NITWN/5-75R.AIPG..VSAVMV
E3HZV5_RHOVT/7-77R.ALPG..VAGATL
B2IDH8_BEII9/4-75K.KLKG..VGNALV
C7C7U4_METED/5-77L.ALSG..VSSVLA
A8TM76_9PROT/6-77L.AIDG..VTSATA
B3CM54_WOLPP/11-75K.AIPG..VEKVTV
B5K864_9RHOB/5-76A.KMDS..VDSVSV
Q28NM4_JANSC/5-76G.KMDG..VTSVSV
A4F1C3_9RHOB/5-83L.SLEG..VEEAFV
Q1GF12_SILST/5-76K.ALPG..VETVAV
A3V6N0_9RHOB/5-76L.ALPG..VDSVAA
A6FQK2_9RHOB/5-76L.SVPG..IARASV
Q2CII5_9RHOB/3-74A.ELPG..VAKVSA
C7D8Q4_9RHOB/5-76G.VLEG..VTSVSA
A3TZA6_9RHOB/5-76A.ALPG..VRDVSV
C8S462_9RHOB/5-76R.ALPG..ISSVQV
A3K0R3_9RHOB/5-76R.AIPG..VTSVSV
A9E2W1_9RHOB/5-76R.DLPG..VGDVSV
A3VMX1_9RHOB/6-77A.ALDG..VEKVTV
A3JT10_9RHOB/5-76K.NLDG..VNSVSA
Q0FF31_9RHOB/5-75L.RMDG..VNQCNV
D0CSC8_9RHOB/4-75Q.MVDG..VAKVSA
C9CUS6_9RHOB/5-76S.DLAG..VEKVSA
A3KAX6_9RHOB/4-73..AAAG..VGNVHI
A3JV53_9RHOB/5-72S.EL.G..ATSVSI
A0NY75_9RHOB/5-76G.ALEG..CESVQV
B9R557_9RHOB/5-76E.ALPD..CTSAQV
E8RRF9_ASTEC/6-77A.ALPG..IEKAQV
D9QKX8_BRESC/4-75K.AMPG..MARVSV
Q1YLS2_MOBAS/6-77A.GVEG..ITSALV

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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