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218  structures 5023  species 15  interactions 13329  sequences 154  architectures

Clan: SufE_NifU (CL0233)

Summary

SufE/NifU superfamily Add an annotation

This clan includes iron sulfur cluster assembly proteins.

This clan contains 4 families and the total number of domains in the clan is 13329. The clan was built by A Bateman.

Members

This clan contains the following 4 member families:

CO_deh_flav_C Lip_prot_lig_C NifU_N SufE

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
NifU_N (PF01592) 5118 (38.4%) View
CO_deh_flav_C (PF03450) 5067 (38.0%) View
SufE (PF02657) 2022 (15.2%) View
Lip_prot_lig_C (PF10437) 1122 (8.4%) View
Total: 4 Total: 13329 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 15 interactions for this clan. More...

Interacting families
A B
Ald_Xan_dh_C2 CO_deh_flav_C
Aminotran_5 NifU_N
SufE
BPL_LplA_LipB Lip_prot_lig_C
CO_deh_flav_C Ald_Xan_dh_C2
Fer2
Fer2_2
FAD_binding_5 CO_deh_flav_C
Fer2 CO_deh_flav_C
Fer2_2 CO_deh_flav_C
Lip_prot_lig_C BPL_LplA_LipB
GCV_H
Lip_prot_lig_C
NifU_N NifU_N
SufE SufE

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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