Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
14  structures 696  species 0  interactions 13284  sequences 243  architectures

Clan: Vps51 (CL0295)

Summary

Vps51 domain superfamily Add an annotation

This clan includes an N-terminal domain from several vesicle transport proteins that are related to Vps51.

This clan contains 17 families and the total number of domains in the clan is 13284. The clan was built by A Bateman.

Members

This clan contains the following 17 member families:

COG2 COG5 COG6 Dor1 DUF2450 Exo70 Exo84_C Sec15 Sec3_C Sec3_C_2 Sec5 Sec6 Sec8_exocyst Vps51 Vps52 Vps53_N Zw10

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Exo70 (PF03081) 1741 (13.1%) View
Vps51 (PF08700) 1599 (12.0%) View
Sec6 (PF06046) 1059 (8.0%) View
Vps52 (PF04129) 848 (6.4%) View
Sec3_C (PF09763) 844 (6.4%) View
DUF2450 (PF10475) 774 (5.8%) View
Dor1 (PF04124) 773 (5.8%) View
Sec15 (PF04091) 763 (5.7%) View
Vps53_N (PF04100) 741 (5.6%) View
COG6 (PF06419) 715 (5.4%) View
Exo84_C (PF16528) 623 (4.7%) View
Sec5 (PF15469) 615 (4.6%) View
COG2 (PF06148) 586 (4.4%) View
Zw10 (PF06248) 567 (4.3%) View
Sec8_exocyst (PF04048) 529 (4.0%) View
COG5 (PF10392) 503 (3.8%) View
Sec3_C_2 (PF15278) 4 (0.0%) View
Total: 17 Total: 13284 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...