Sequence alignment for CL0300

PF10399

UCRI_RHOCB/1-41MSHAEDNAGTRRDFLYHATAATGVVVTGAAVWPLINQMNAS-
UCRI_ALLVD/10-50PMSAQGVNKMRRRVLVAATSVVGAVGAGYALVPFVASMNPS-
Q5NNY0_ZYMMO/20-60GQPETSDSLDRRDFLNVAAAGLAGIGVCGAAIPFIAQMNPS-
UCRI_BRADU/2-42TTASSADHPTRRDFLFVATGAAAAVGGAAALWPFISQMNPD-
Q9AAX0_CAUCR/5-45TEPEHGGDPSRRDFIHIAAIAAAAGGAATLAWPFIDQMNPS-
Q1GCS0_RUEST/1-41MSHAEDHEGTRRDFLYYATAGAGAVTAGAAVWPLVNQMNPS-
Q2RXH6_RHORT/7-47TASTPGGESSRRDFLIYGTTAVGAVGVALAVWPFIDFMNPA-
A8LTC3_DINSH/1-40MMEA.SENTARRDFLYYATVGAGVVATGAALWPLVNQMNPS-
Q7CXJ6_AGRT5/6-46TNHDASGEPTRRDFLYLVTGMAGAVGAAAVAWPFIDQMRPD-
A0L4J1_MAGSM/1-41MSTVNEHDENRRDFLIMATGAVGAVGVAGAAWPFIDSWSPS-
Q15PI5_PSEA6/13-53VTENQPQDNNRRRFLTVATSVVGGVGVAGAAIPFIGSWNPS-
Q6NB14_RHOPA/1-41MTAITSEQPSRRDVLYLATGALAAVGTAAMVWPFVSQLNPD-
Q1GTG3_SPHAL/7-47LNAGIEDGVRRRDFINIAAVSFAGVGAVAAVLPLVNQMNPS-
A5V644_SPHWW/10-50PGEGAGDGVRRRDFINLAAVSFAGVGAATVLLPLINQMNPS-
Q2VZT3_MAGSA/8-48AQPSSVDGQTRRDFLLYATAGVGAIGTGLALWPFVHSMNPA-
Q0ARQ8_MARMM/7-47APGADGQEPSRRDFIYIAAGGVAAVGGGLVAWPFIDQMNPA-
A5WDK7_PSYWF/10-50MSHAEGVNIKRRRVLIASTAAIGAVGVASVATPFVRSWYPS-
Q3SPC1_NITWN/1-41MTTSSSAGQSRRDFLFVATGAVAAVGAAAAAWPLVAQLNPD-
Q217F6_RHOPB/2-42TSATIPDQPTRRDVLFVATGAVAALGAAAVAWPLVAQLNPN-
Q4FPG5_PELUB/1-38MSE...KKPERREFLFTASYAVGAVGVGAVVWPLVDQMNPD-
Q212B8_RHOPB/3-43TATLLPEQPTRRDVLYIATGAVAAVGAVAAVWPLVVQLNPD-
Q1QLI7_NITHX/10-50IKKPSGRSPTRRDFLYIATAAVGTVGVAAAIVPMISQLEPD-
A4SV32_POLSQ/1-40MSDKPCMDKDRRNWL.IATSAVGGVGAAAALYPFVDSFEPS-
A7HVC3_PARL1/1-41MADIHAVEPTRRDFLYVATGSLAAVGAAFTVWPLIDQMNPD-
Q0C5B3_HYPNA/4-44ETHAEAVDEDRRNFIHIATGSVALGGAAMFAWTLVDQWNPA-
Q28VM0_JANSC/1-41MSDTHDPSGDRRDFLYYATAGTGVVVAGAAAWPLVNSMNPS-
Q92PE6_RHIME/6-46TSSETMGEPTRRDFLYLATGMAGVVGAGAAAWPFIDQMRPD-
A7IJK0_XANP2/2-42AHTETSDTTTRRDFLYIATGAVGAVGAAAMVWPFISQLQPD-
Q2RV52_RHORT/12-52PSLDDDGFKTRRDFLIYGTLAVSAAGAALAAWPFIDFLNPA-
Q98HU4_RHILO/1-41MSATDIHDPNRRDFLYVATGMAAVVGAGAVAWPFIDQMRPD-
Q73FX2_WOLPM/22-62PVKDLTKNKSRRDFITLTTCAMAGIGAASGLWPLVKSMNPS-
Q11GB7_CHESB/4-44TDSTHIPEHSRRDFLYVATGMAGAVGAAAVAWPFIDQMRPD-
A1B4F2_PARDP/11-50.EHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVNQMNPS-
A6WZD5_OCHA4/1-41MSAHDTAEPTRRDFLYIATGMAGVVGVGGLAWPFIDQMRPD-
B2FJ96_STRMK/7-44...HDPVNTGRRRFLSATTAVVGAVGVGFTAVPFIKSWNPS-
B7JAL3_ACIF2/7-45.SEHGHKNITRRRFLAAATSAVGAVVAGMVAVPLVDSLEP.-
B8CIY0_SHEPW/2-40..SNAPVDTGRRRFLTAATAVVGGAGAAAVAVPFIKSWNPS-
F2IZP4_POLGS/1-41MAHSDSAEPTRRDFLYIATGAMGAVGVGALAWPFIDQMNPD-
Q6NAJ3_RHOPA/35-74.TTEASAEPTRRDFLYIATGAVAAVGAAAAVWPFISQMNPD-
UCRI_RICPR/5-44.EDNKNKQTTRRDFIVLTASSVAAVGAACAFWPIIDSFNPS-

PF10518

A0A022MZ98_9ACTO/3-28-------ELTRRNLFRHGTAAGAVVVLSAEAFN---------
Q9F2J1_STRCO/52-77-------ALSRRSMMRAAAVVTVAAAGAGAVGV---------
Q7ND06_GLOVI/3-28-------EYSRRELLKFLGVTGGAALLGSMIPG---------
Q82BU3_STRAW/10-35-------ALHRRSFLKYSGALGAAAALSSSLAA---------
A7N0D1_VIBCB/8-33-------NITRRDALKGGSALGALALAGNALSL---------
A0LCA2_MAGSM/17-42-------RLSRRQAMQGLMAGGAMVALHRLPGV---------
Q939S4_DESHA/11-36-------GMNRRSFLKVGAAATTMGVIGAIKAP---------
A6VXP0_MARMS/6-31-------DSNRRRMLGFMAGAPLLPLAGGVFSS---------
A6CDE2_9PLAN/4-29-------SSSRRLFLKSAIAAPAAGTVFSRFLS---------
Q2KX41_BORA1/26-51-------NLSRRAVMRGSLVALAGMSTLGLAAC---------
Q2IPE7_ANADE/2-27-------PLTRRDFLKASAAASALAGLGLPVDA---------
A3JVA6_9RHOB/4-29-------KTSRRAFLRGAAAVGAGAATVGAAAA---------
A6V4F1_PSEA7/33-58-------GLGRRQVLAGGAALGALAFLGVSLPA---------
A8L8A7_FRASN/2-27-------AVNRRQVVVGTGAAGLGFTLSGAVSS---------
A9VX30_METEP/17-42-------RFSRRDLMRGSLATALAAGLAPQTVA---------
Q82BD9_STRAW/2-27-------ELNRRTLIAGTAAAGIAATTLGGTAQ---------
Q82CS1_STRAW/11-36-------RFSRRNMIRGGAVTLGAVAGGAFVPG---------
Q4ZMA5_PSEU2/23-48-------GLTRRGFISAGALCGAAMFLGGNLLS---------
A1THZ7_MYCVP/50-75-------AVSRRSLLHAGGVAVLAVGAGSALAA---------
Q2RLA8_MOOTA/5-30-------KITRRTFLKGSLAAGALATFGGKLIP---------
A3TJD4_9MICO/52-77-------GVSRRAALRVGGAGAAVVGLTAWSMP---------
A5UXR1_ROSS1/28-53-------TLSRRRFLTLSAMTAASAAIAACGGG---------
A4FR09_SACEN/52-77-------VVDRRGLFRAGAVVAVSTAAASSALA---------
Q6LKR0_PHOPR/2-27-------DKKRRQFIKSGLAVGGVSAFAAGYSS---------
Q1R007_CHRSD/26-51-------HVSRRDIMRGGLSLAALGMLGGIGGL---------
A1WXL7_HALHL/20-45-------ACSRRDFLKLSGMSTGAIAAGALGAG---------
Q7NN53_GLOVI/4-29-------VMQRRDFLEFLAAAGAATLLPAPAEA---------
Q2J0K9_RHOP2/7-32-------TSNRRSILKGALAVAAAPAVIGQALA---------
Q0HV33_SHESR/26-51-------HLSRRNFVKSGLGLGAMTAFAGVGLV---------
Q0KEQ1_CUPNH/33-58-------NPARRRVLRGGLGLSLASAFGSGLLA---------
A9AD00_BURM1/6-31-------NASRRHALKILAGAPMLPLSGLALPA---------
A5V967_SPHWW/31-56-------RYSRRQTLFGGISAIAAASFGGLLLT---------
Q5V5G3_HALMA/11-36-------QASRRTFLKATGVATAAAATGAGVGT---------
Q162F5_ROSDO/5-30-------QPTRRSFLQGGAAVFGATSLMGTTAL---------
Q08NU5_STIAD/4-29-------KNSKRWGALAALGLWACTGDTGPTGP---------
A4FR05_SACEN/31-56-------VLSRRGALKAGGVLALSVGAASALGS---------
A1K7B1_AZOSB/7-32-------KASRRNMLKGSASLAAVPFVSTFALV---------
Q16C45_ROSDO/42-67-------RYGRRDVLRGALGVTATTALFGTSAL---------
Q161Y3_ROSDO/14-39-------KLNRRQMLKGTAAVGAMAMMPKGAAM---------
Q3MD12_ANAVT/2-27-------AFSRRKFFTIAGATAAGTLAASPLEG---------
Q4JY48_CORJK/16-41-------QFTRRQVLQTSAAGAAAVGIGAVAAN---------
Q4JY10_CORJK/51-76-------TFSRRTALRAGGAAMVTVGGASFLAA---------
A4Z0J9_BRASO/3-28-------AITRRNMLAGTAAAGALALTGQPARS---------
A9KU00_SHEB9/7-32-------DMGRRQLLKALALGSAAGAVVTVSSQ---------
A6GL01_9BURK/13-38-------SVRRRNLLKTFLYGASASALPWMAGC---------
A3INH2_9CHRO/2-27-------VIKRRDLLKFLGVTTGTALLSQATKG---------
A4XC22_SALTO/52-77-------EVSRRGVVRAGTVGALVLGFGGAGAL---------
B8FSM6_DESHD/7-32-------NVSRRNFLRGAAASAVGIAAMGVLGG---------
A6F2I0_9ALTE/34-59-------RMQRRTVMKGSVGAALASVMGLGLAG---------
A4B9W1_9GAMM/18-43-------AMSRRQIIKTGGTVSAAGFLAGTSAL---------
Q098B3_STIAD/2-27-------SFNRRHFLRFSVVTGTALTLGPGFWR---------
A4XEM0_NOVAD/2-27-------TVDRRSFIAASLVSAAAAKTALAQTP---------
A0A011T8U2_VIBPH/26-51-------SLSRRSILKGGLGISAMTAFGAFGLA---------
A0A038IDW0_BORBO/6-31-------MSKRRLVLKMLGGAPMLPLGAVGAAT---------
E6XRD2_SHEP2/3-28-------NIHRRHFLKAAGAVTAGLITANITAS---------
B8FVY9_DESHD/35-60-------RISRRGFLKTGAVAAAMGVMGAIVGP---------
A5WH70_PSYWF/43-68-------SATRRSVIAFLAGVPMLPLAGCNTSA---------
B6BYP0_9GAMM/50-75-------RLKRRTLLKGAGLVAASPVLAWASSL---------
B9LMJ2_HALLT/4-29-------NYTRRTVVSSLAALAAASQTAGSVAG---------
Q1Z9K7_PHOPR/31-56-------SMSRRRFMGAASVMTAGAFMAGMPVS---------
Q2S867_HAHCH/33-58-------RIARRTVIKGGVSAALAGMLGMSLVG---------
A3Q2R2_MYCSJ/2-27-------SISRRQVLKAAAPAVLGMSAGLQAVA---------
N8ZV99_ACIBI/9-34-------HPTRRDLLKWFTGIPFLPLGAMATAA---------
Q18K43_HALWD/6-31-------EVNRRRFLRATGAVAATVGVAGCSQG---------

PF08802

UCRI_SYNP2/9-46---D.VPDLGRRQFLNLLWVGTAAGTALGGLYPVIKYFIPPS
UCRIC_NOSS1/9-45---S..PSLSRRQLLNFITGATVAVTAGAALYPAGKFLIAPA
UCRI_THEEB/9-46---D.VPDMGRRQFMNLLTFGTITGTALGALYPVVKYFIPPA
UCRI_GLOVI/7-44---QEIP.MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPS
UCRIA_SOLTU/59-97---DRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPG
UCRIA_ORYSJ/54-92---DRVPDMGKRQLMNLLLLGAISLPTVGMLVPYGAFFIPAG
A4RS90_OSTLU/44-81---D.VPDMTKRSVMNLLLVGAIGLPATSLIGGYAYFFVPPS
B3EMF9_CHLPB/39-76---DGV.DFERRSFLGKAVVGVGAVVAASTLYPVVNYIIPPP
A8J9Y1_CHLRE/34-72---SEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPS
UCRIB_NOSS1/10-45---...PSMSRRQLLNFFTGAIVATTASAAIYPATKFFMPPA

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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