Sequence alignment for CL0308

PF03916

O30284_ARCFU/4-302LNPQHYYLLQQPWWGILIAF.YLFLG..GLGAM..AFC---ISFYF....WRQKGS..QS..........L.VVGGSLL.
NRFD_HAEIN/6-321PVPFHTPNL...VWDYTIAI.YLFLL..GISSG..AVQ---LAIAY....KRSNKL..ENL..SQN...WI.IRSGVIL.
Q9CPL1_PASMU/2-319NSPFHFPSL...VWDHTIAV.YLFLL..GISAG..ATM---LAVLL....KRA.GL..AGAEPSNN...HV.IRCTAFL.
I0HUM7_RUBGI/48-336VVTGMSDQV...SWGFYIAN.FAFLV..GIAAA..AVL---LVIPA....YLFHR.....G..DVK...QV.VIFGEAL.
PSRC_WOLSU/6-317GSIEQYNTV...VWHWPIAV.YLFLA..GLSAG..AII---SAIII....KWMKGN..ESS..PWD...GI.IKAGALI.
Q97XY0_SULSO/39-347TEPND.EPI...PWGLLVIG.YMFFG..VIGTG..VST---YNSLY....ELFNKNHPEKN..PFK...NISLRNEWI..
Q9Y8M5_AERPE/24-334D..FKAGGA...IWGVLLVV.YPLMT..GILAG.SYLV---SALAYGFGVKRLYRV..AGL..S.....LI.ISVGLLLS
HMEB_ARCFU/40-332GLNGLSNRV...PWGIVNAG.IPYFI..GLSAG..SLI---VSALA....GVFNIK..KYK..VFS...RI....AAYM.
TTRC_SALTY/9-291EVLAHPQDI...SW.LPWAVQYFFFI..GIAAC..AAL---FACYL....HWRKKD..AAT..EENRALLI.AITCAIT.
O30063_ARCFU/31-338.VTNMRNPF...SWGLYIAM.WAFFV..GTAAGGLVVS---SAIYI......FGAR..EFK..PIA...PV.ASTTAFI.
D3RSP2_ALLVD/43-337WVSGMNNSV...VWGTPHVF.AVFLI..IAASG..ALN---IASIG....TVFKKP..IYK..PLG...RL...SGLL..
DMSC_HALSA/45-360GLIETGMRN...VFSWGLYI.MLFVLFVGLSAG..GLI---LSSAP....KFFHSQ..R.....YE...GF.ARLGVLV.
NRFD_ECOLI/4-318TSAFHFESL...VWDWPIAI.YLFLI..GISAG..LVT---LAVLL....RRFYPQ..AGG..ADS...TL.LRTTLIV.

PF14589

E4U7V7_OCEP5/1-254MTGEWGIYIVLYFW..........LA--AMGGG--AFL---IA.LG----LRDERA----------------RRSGAFL-
E4U7K8_OCEP5/1-265MTTFYGLPGAEAFWHWTTLVHFLLVA--LAGGT--AFY---TAVLG----IRRAAS----------------ARGLAWL-

PF04976

YNFH_ECOLI/1-274MGNG--------WHEWPLVI-FTVLG--QCVVG--ALI...VSGIG----WFAAKN--DAD--.RQ---R..IVRGMFF-
O67278_AQUAE/1-314MH..--------.PPISLIF-FFLTA--GTSIG--LFIFTYFIEFL----TLFGKG--QGL--PKE---V..VLVSGVI-
Q9CK77_PASMU/1-272MN.G--------LHELPLVI-FTVLA--QSVVG--AFL...LFAIV----LFTTED--KHY--.RA---Y..VHKAMFV-
Q98BE5_RHILO/1-311MH..--------.PAFSVVF-FTTAT--GAGYG--......LLALL----GVLGGF--QII--PPD---FWLGLVGMGL-
DMSC_ECOLI/1-277MGSG--------WHEWPLMI-FTVFG--QCVAG--GFI...VLALA----LLKGDL--RAE--AQQ---R..VIACMFG-
DMSC_HAEIN/1-269MNTG--------LYELPLVF-FTVLA--QSAVG--AWL...VFTFV----LLNEKN--TKS--.RT---Y..IHKVMFV-

PF03916

O30284_ARCFU/4-302GLIAVL.I.GTLFLILDLG.HPE.RFYLVL.LSPRLNP..S...SWIV..I.GS..TLLS..AFMLFAA...LFVAPM..
NRFD_HAEIN/6-321GSVPTL.I.GLTLLIFHLT.RPW.TFWKLM.F..NYQF..N...SVMS..M.GV..MLFQ..IYMLFLV...IWGVVIFK
Q9CPL1_PASMU/2-319APLSLI.I.GLVILIFHLT.KPW.TFWYLM.F..NYST..T...SIMS..M.GV..MLFQ..AYMLFLL...VWLAIIFH
I0HUM7_RUBGI/48-336AVAAVV.A.AMLFVTVDIG.RPE.RIWHMLPV..VGRF..N...WPLS..M.......LA..WDVVVLV...GYL.....
PSRC_WOLSU/6-317APLTIG.A.GLLLLIFDLT.RPL.HFWKLL.I..FYNF..S...SVMT..L.GV..LALF..AYFPVVL...IFLLGVFK
Q97XY0_SULSO/39-347.ALTVL.I.PGWIMVFASTYKPG.E..AVY.I..YTSFRDT...SRIA..WNGL..LYAL..VGIGIIL...EILALIGE
Q9Y8M5_AERPE/24-334APIFPM.A........DLK.QPQRAFEIFL.R..PHVI..P...SDAY..P.GVSPMAFFGILYIPLLVVALLNLIFVYR
HMEB_ARCFU/40-332AAAWII.A.AILSIALDIG.KLY.HFMNAV.R..YFNP..T...SIFS..W.NA..FLYS..SYFVICS...IYLLVQFE
TTRC_SALTY/9-291APLALT.A.DL.....HQTARVW.HF.........YAW..PTPWSWMP..W.GA..LFLP..LFTGFLA...LW......
O30063_ARCFU/31-338..FAVG.A..MVMVLPDLG.RVD.RILNMF.L..YPNF..S...SLLP..W.DL..IVLS..TYAFLSA...IYTYVLLM
D3RSP2_ALLVD/43-337.AVAML.MGGLLVLVMDLG.RPE.RLIVAM.T..NYNF..S...SIFA..W.NI..FLYT..GFMAIVI...AYLWSMAD
DMSC_HALSA/45-360SLGCIIVA.GLLIL.PDIG.RPD.RIYQFV.T..SPDF..R...SPMVWDF.GI..VMLY..GALNVWY...LWLLT..R
NRFD_ECOLI/4-318GPGAVI.L.GLLILVFHLT.RPW.TFWKLM.F..HYSF..T...SVMS..M.GV..MLFQ..LYMVVLV...LWLAKIFE

PF14589

E4U7V7_OCEP5/1-254AFIGIV-I-GALLLIVDLG-QPV-RFWH..-L--LVGF------HPISVMWLGSAVLALSGLGLFLLLV-----------
E4U7K8_OCEP5/1-265ALAFIV-L-DLFMLWAESP-ARF-RFSHVW-L--FLSF------EPASAIWWGAWGLATSALMLLLLAL-----------

PF04976

YNFH_ECOLI/1-274LWLLMG-V-GFIASVMHLG-SPL-RAFNSL-N--RIGA------SGLS----NE--IAAGSIFFAVGGL---WWLVAVIG
O67278_AQUAE/1-314SLILIG-A-GAIGASFHLG-HKL-RAWKAI-K--RFNT------SWLS----RE--AVFSGA.YGFTLL---IYLVLKYF
Q9CK77_PASMU/1-272LLALLG-I-GFIASITHLG-SPL-RAFNAL-N--RVGE------SMLS----NE--IATGALFFALAGI---YWLFAILD
Q98BE5_RHILO/1-311ALGLIV-A-GLLSSTGHLG-RPE-RAWRAF-S--QWRS------SWLS----RE--GVASVITFIPAGL---FGLGWVFL
DMSC_ECOLI/1-277LWVLMG-I-GFIASMLHLG-SPM-RAFNSL-N--RVGA------SALS----NE--IASGSIFFAVGGI---GWLLAMLK
DMSC_HAEIN/1-269ILALLG-I-GFIASIMHLG-LPI-RAFNSL-N--RVGS------SMMS----NE--IAAGAIFFTLAGF---YWLIAILG

PF03916

O30284_ARCFU/4-302....LRWFK.....WV.P...............WAK...........S...........EAAIR..AFGWLA.FITGIGV
NRFD_HAEIN/6-321K..EIEALINR...FI.PK..........LQ.FVMK....LIGI...A...........ERIVS..PVEVIL.FILAAVL
Q9CPL1_PASMU/2-319Q..LVATLIEQ...YAKP...........LR.FVNK....LIAF...A...........AKFTG..LIEIIL.IILSVLL
I0HUM7_RUBGI/48-336....LLNLG......L.PA..........YV.LHAR....WRGE...E...........PVTARYFPVVIVA.IFWAVSI
PSRC_WOLSU/6-317K..ELCDEG........P...........FG.FLAP....LANI...A...........YSMAR..PLEIVT.FVLAIGV
Q97XY0_SULSO/39-347KRREYKDPISR...LL.AW..........LS.SKSV....LILI...V..................GYAILMELILDANL
Q9Y8M5_AERPE/24-334A..DMAAKA........EA..........TGNIIYR....IVSL...GRGYSREDVERDRRVVK..ILSIIG.VILAILF
HMEB_ARCFU/40-332.....EMEK......................................A...........TRFMA..GLAVFW....AVLV
TTRC_SALTY/9-291....FLAQQ........................IKR....LFNK...S...........YNVTK..WLALAS.ALCAVGL
O30063_ARCFU/31-338P..RIAERG.........V..........LG.FLKKDATDLESLRQKS...........EKYAK..VLAPIA.LPFAILI
D3RSP2_ALLVD/43-337R..QGGPFN......Y.P...........IG.ILAL....VWRL...A...........................LTTGT
DMSC_HALSA/45-360R..DLAARGSRLSLWV.SDSAAGRDRDRTLM.FWTA....VCAL...P...........AAVA....LHSVTGWIFATQV
NRFD_ECOLI/4-318H..DLLALQQR...WL.PK..........LG.IVQK....VLSL...L...........TPVHR..GLETLM.LVLAVLL

PF14589

E4U7V7_OCEP5/1-254---....MR-----------------------EWPG------------------------------WLVWVT-AILVLLV
E4U7K8_OCEP5/1-265---GLGPAR-----------------------FWAG------------------------------VLALTS-AV....V

PF04976

YNFH_ECOLI/1-274K----------------------------MPQALGK------------------------------LWLLFS-MALGVIF
O67278_AQUAE/1-314E----------------------------VSPFLEH------------------------------TFGIIT-WILGILS
Q9CK77_PASMU/1-272K----------------------------LPKAFGR------------------------------FLLVCA-SAMGLIF
Q98BE5_RHILO/1-311G----------------------------RTGGWAA------------------------------IAGLLA-AIGATVT
DMSC_ECOLI/1-277K----------------------------LSPALRT------------------------------LWLIVT-MVLGVIF
DMSC_HAEIN/1-269K----------------------------MPVSLGN------------------------------VWRIVT-ALIGILF

PF03916

O30284_ARCFU/4-302AAYTGILIGIVFNIPFWNAPALPV.IFMISALSTG...LAS.LILLMLV.VDR....EAH.EIHVMAKTDGFV.MIF..E
NRFD_HAEIN/6-321GAYTGFLLSALISYPMLNNPVLPA.LFLASGTSSG...IAA.TFLIILI.AGKLKG.DSH.ESHFIHKFEVPI.MVT..E
Q9CPL1_PASMU/2-319GAYTGFLLSALISYPMLNNPVLPI.LFLASGTSSG...IAA.LIFCTLL.FTKEDT.HSP.ALGFLHKFELPV.VLM..E
I0HUM7_RUBGI/48-336HTVTAFLFSANAGRPLWHSALLAP.RFIASAFASGPALIIV.ALLALRR.WGGLAV.KQT.VIDLL.....AV.VMT..V
PSRC_WOLSU/6-317GAYTGFLLSAMYSYPLLNTPILPL.LFLASGISAG...ISG.NLLIGLL.FFGKST.KGE.NVGYLHGLDFKV.ILF..E
Q97XY0_SULSO/39-347GSVFGYLSTWVYEF....GPFMSM.LFVILSFYSG...IAMLSFMTPLYNRFRKVK.EDP.NSLSIH..EMYK.ILG..R
Q9Y8M5_AERPE/24-334HGYFDILLASIKSRILWVDPSLPI.RLLASAVFSG...AAL.VTVAYYI.AARFSPGESI.DAGTMKTLSLIM.LFG..L
HMEB_ARCFU/40-332HSGTGAIYSFVYSKELYHSALTPP.MFIVCAITSG...L.G.LLLANLY.FTFRFT.KRELDPKLIRGL.....ALI..F
TTRC_SALTY/9-291LIYTGREVSVVLARPIWFSYAFPVAMFL.....SA...LQA.FFALMIV.AARR.......DSVRLPKILWGQ.IWTLAA
O30063_ARCFU/31-338HTVTAWVLATQLSRPWWYGGLLAP.TFIAAAIATG...PAV.VILASLF.VYGYED.RLK.NA...YRLLGKISAAS..S
D3RSP2_ALLVD/43-337GSIFGFLV.ARQAY...DAAILGP.MFVALSFAYG...LAV.FMLV..L.MFGFEE.EGR.PIG.......PR.MMR..R
DMSC_HALSA/45-360G..RGDWFSPL.........VAPV..FIAKALVSG...LGL.LLVVSIL.ADRFTA.FTA.DRGELTSLGKLL.GIF..L
NRFD_ECOLI/4-318GAYTGFLLSALKSYPFLNNPILPV.LFLFSGISSG...AAV.ALIAMAI.RQRSNP.HST.EAQFVHRMEIPV.VWG..E

PF14589

E4U7V7_OCEP5/1-254VGYTGVLLMA.TARPFWSGSPLMPWIFLASAYTTG---AAL-LVLLG----------NRE...PGLHRISFNF-ALI--E
E4U7K8_OCEP5/1-265LAYPGYALAANAARPLW..DHLLLAFFPASGLLLA---LAV-LVWLR----------PAEEAAPWLQVA....-ALA--S

PF04976

YNFH_ECOLI/1-274VWMMTCVYQ.IDTVPTWHNGYTTL-AFFLTVLLSG---PILAAAILRAA--------RV.-.TFNTTPFAIIS-VLA--.
O67278_AQUAE/1-314GFSTAMIYASNKFVLEWNTGITVI-YYLLMYLMLG---SSAFTIISYFY--------NLP-YTGTFLFLTFLF-VLL--G
Q9CK77_PASMU/1-272MYMMNKVYH.ISTVPTWHTSFTTW-GFYLTIILAG---FTLGYGLLHSE--------RPD-.AKVVSWVPTLV-SIT--.
Q98BE5_RHILO/1-311VCTTGMIYASLKPIAQWHSHYTLP-AYLIFAAMTG---SVLLNALLQGF--------GVA-.SVAVLALSLLA-TLA--G
DMSC_ECOLI/1-277VWMMVRVYNSIDTVPTWYSIWTPM-GFFLTMFMGG---PLLGYLLLSLA--------GVD-.GWAMRLLPAIS-VLA--.
DMSC_HAEIN/1-269MYVMNQVYH.ITSIPTWNNALTSW-SFYLTVVLGG---LTLSYALLIPN--------KQR-.EYQLQHLPSLF-AIG--.

PF03916

O30284_ARCFU/4-302LIVLS......I....FLL.I..RSY.......GPVAA..IESVNT...V..........LFG.WL...A......PYFV
NRFD_HAEIN/6-321LGLIV......C....FFV.G..LHF.......GGGQK..TVALHN...A..........LSG.FW...G......VVFW
Q9CPL1_PASMU/2-319IFLLA......A....FFI.G..LYL.......GGGQK..TVAFET...A..........LLGGFW...A......HVFW
I0HUM7_RUBGI/48-336ALQIS......L....FFV.G..VEL.......FTDFY..NETTHA...A..........SMR.............YLF.
PSRC_WOLSU/6-317AFLLF......I....LFV.G..MYY.......QGGST..AEVAKA...A..........LTTGGL...A......SLFW
Q97XY0_SULSO/39-347DGVLA......T....IAV.G..FSLLWWLWLTATNQQ..TSAWAE...L..........MISGPY...S......VVFL
Q9Y8M5_AERPE/24-334AAALITEITSEI....LRV.G..YYL.......LPGEG..IEYYES..............LRG.............SMF.
HMEB_ARCFU/40-332AGLMM......V....LGY.F..LAV.......EGLEKGYIPALHE...A..........VQFVFL...TPTSGVFWSFW
TTRC_SALTY/9-291LGLVV......A....MWVSG..DTL.......SGTAI..RQWITV...A..........LSA.............KYYA
O30063_ARCFU/31-338AALLF......MYYNDFLV.R..YWW.......GEGLE..YEALAI...V..........FRD.YL...H......IHF.
D3RSP2_ALLVD/43-337LRNLL......A....LFI.GIALYF.......TLVYH..LTNLYM...AKNDSLEHWLLLSGGIY...T......FLFW
DMSC_HALSA/45-360AFHVV......Y....L......LAA.......ERLPH..AWAHHFGFWA..........ITSNFLIGDT......VYFW
NRFD_ECOLI/4-318IFLLV......A....FFV.G..LAL.......GDDGK..VRALVA...A..........LGGGFW...T......WWFW

PF14589

E4U7V7_OCEP5/1-254IVLVV------AHLIWTYP..--LAK-------NAVQA-----------A----------LTGELA----------WAFW
E4U7K8_OCEP5/1-265LALAA------.....LYPVA--LAS-------GGADA-----------R----------LAFALW----------LRGW

PF04976

YNFH_ECOLI/1-274................LIACAGVIVL-------QGLSLASIHSSVQQASA----------LVPDY.........A-SLQV
O67278_AQUAE/1-314LGFRIAFNVRQFYIKRPTLNEALNLP-------HNRSIRVIDKSSTTDNY----------CTTEFYYAKGKQMLP-TFIP
Q9CK77_PASMU/1-272................TLVAAIVIIY-------QGFALSTVVTSAQKATA----------LVPDF.........A-TLSA
Q98BE5_RHILO/1-311WGWKLATWRYNDRLKISTTANTATGL-------AGGTVRSLEWPHTEENY----------LLKEMGFRIARKHSA-KLRR
DMSC_ECOLI/1-277................LVVSGVVSVM-------QGAELATIHSSVQQAAA----------LVPDY.........G-ALMS
DMSC_HAEIN/1-269................VSLVAIVAIY-------QGFNLHNIHSAIQNAAD----------LVPNY.........A-IMTV

PF03916

O30284_ARCFU/4-302GGVLLMGLAIPIMLI.FGYEVKR...PGVTAVTVISAIFVLVGGALLRYVVLEAGILQ.IP-----
NRFD_HAEIN/6-321VGVLIIGILIPLIAN.M..FVNDRLKYNRNFI.ILVSIFDLIGVFCLRFFILYAGQLT.VA-----
Q9CPL1_PASMU/2-319IGVVGIGLVLPLLLNGI..ATPQ.LKHRKGFM.LLVACLGLIGVLCLRFFILYAGQMT.LA-----
I0HUM7_RUBGI/48-336FGLAGAG.....KLQ.P..WIWTALALNVVAV.VILSIHPLR..RTPRLLVLACGLVF.LG-----
PSRC_WOLSU/6-317LGVAGMGLALPVVLN.V..ALPHGIKHSSGFV.MLNALIVLAGVMALRFYILYAGQTF.VG-----
Q97XY0_SULSO/39-347IGGVLVGVIIPIILY.G..LVYK..RGSSHML.VTSSIFTLLGMFSI.........IT.IA-----
Q9Y8M5_AERPE/24-334IDNAYYILALILLVS.L..LIPR.VRENIHSV...AAIAALA...............I.VA-----
HMEB_ARCFU/40-332LLV.IFGIAIPII...I..VLNPKTGYDLRWI.TFAGILHAALVFAERFYLIIPGQVF.PE-----
TTRC_SALTY/9-291VGWVALWVCTLLFCS.L..ALRHPLSQLRRVL.LVLSALALCWLM..RWTLLIQVQ.T.VP-----
O30063_ARCFU/31-338LEVLFI.LFSAIVLA.K..ATTR......ARL.IIGSVSVNVGVLLHRFLLMPPAYNV.FA-----
D3RSP2_ALLVD/43-337VGWILVGSLAPMWI..L..YHPV.LSQKREWI.IGACTLVIVGGFSAMYVIIIGSQAFPIA-----
DMSC_HALSA/45-360L.WTGLGGAVPLLL..L..ATPS.LRRRTAVI.FTASVLAVFGTLFEGIRLVFTGYQR.VN-----
NRFD_ECOLI/4-318LGVAGLGLIVPMLLK.P..WVNR..SSGIPAV.LAACGASLVGVLMLRFFILYAGQLT.VA-----

PF14589

E4U7V7_OCEP5/1-254-GFVVLGVALPLYMEA.-------.QRRAASL---AALLVLAGGFLLRYFIVYAGQTG..VLRF--
E4U7K8_OCEP5/1-265-GWFLLGGGL.LFLAAF-------LARRAPAL---AGACALAGAFVLRSWIVEQGQHSFFVHGF--

PF04976

YNFH_ECOLI/1-274WRVVLLCAGLGCWLC----PLIRRREPHVAGL.ILGLILILGGEMIGR..........-.VLFYGL
O67278_AQUAE/1-314LAYLFTFVIPLFLLI----YIYVTDVVNLPLL.VLIYLSILAGSAIERWCFFVEGNHV-QNLFYGL
Q9CK77_PASMU/1-272LRFVLLGLAIACLFY----VLH..KPASWMSK.LCAVLLVFAAEMIGR..........-.TLFYGL
Q98BE5_RHILO/1-311IAQALAFSLPVLLLA----ATFALPWPFAAIPSVLAAIIQFAGMLVERWLFFAEAKHT-VTLYYCR
DMSC_ECOLI/1-277WRIVLLAVALCLWIA----PQLKGYQPAVPLL.SVSFILLLAGELIGR..........-.GVFYGL
DMSC_HAEIN/1-269TRLCLLSIVAFLLF.----.....RVKNIGLL.GISVLLTLVAEGIGR..........-.VLFYGL

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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