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115  structures 3218  species 2  interactions 21160  sequences 552  architectures

Clan: Pilus (CL0327)


Pilus subunit Add an annotation

This is a clan contains bacterial pilus subunits and proteins involved in secretion. Pili proteins enable the transfer of plasmid between bacteria. The families in this clan adopt an alpha helical structure which is packed against a beta sheet [2-3].

This clan contains 10 families and the total number of domains in the clan is 21160. The clan was built by J Mistry.

Literature references

  1. Telford JL, Barocchi MA, Margarit I, Rappuoli R, Grandi G; , Nat Rev Microbiol. 2006;4:509-519.: Pili in gram-positive pathogens. PUBMED:16778837 EPMC:16778837
  2. Xu XF, Tan YW, Lam L, Hackett J, Zhang M, Mok YK; , J Biol Chem. 2004;279:31599-31605.: NMR structure of a type IVb pilin from Salmonella typhi and its assembly into pilus. PUBMED:15159389 EPMC:15159389
  3. Hazes B, Sastry PA, Hayakawa K, Read RJ, Irvin RT; , J Mol Biol. 2000;299:1005-1017.: Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding. PUBMED:10843854 EPMC:10843854


This clan contains the following 10 member families:

Bundlin N_methyl N_methyl_2 N_methyl_3 Pilin PilS T2SG T2SI TcpA YadA_anchor

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
N_methyl_2 (PF13544) 9430 (44.6%) View
N_methyl (PF07963) 4741 (22.4%) View
YadA_anchor (PF03895) 2384 (11.3%) View
T2SG (PF08334) 1599 (7.6%) View
Pilin (PF00114) 1425 (6.7%) View
T2SI (PF02501) 934 (4.4%) View
PilS (PF08805) 332 (1.6%) View
TcpA (PF05946) 136 (0.6%) View
N_methyl_3 (PF13633) 98 (0.5%) View
Bundlin (PF05307) 81 (0.4%) View
Total: 10 Total: 21160 Clan alignment

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls


This tree shows the occurrence of the domains in this clan across different species. More...



There are 2 interactions for this clan. More...

Interacting families
YadA_anchor YadA_anchor
Pilin Pilin


For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...