Sequence alignment for CL0354

PF09023

SSPC_STAA8/3-107QLQFINLVYDTTKLTHLEQTNINLFIGNWSN-------HQLQKSICIRHGDDTSHNQY---------HILFIDTAHQRIK

PF09022

Q2G2R7_STAA8/1-105MEQIELFSIDKFKCNSEAKYYLNIIEGEWHP-------QDLNDSPLKFILSTSDDSDY---------ICKYINTEHKQLT
Q5HKF5_STAEQ/1-105MHNYNNINIVSDDSKYQEICWFHTLEGIWHP-------VEVETSPLNITFNKEITPNY---------VCTLINEDSRKII

PF02974

B9JDQ6_AGRRK/142-236-------------------PTTASLSGGWQV------RQPDGKAMCDVTLTSETDKDG-TPKMSPGEDCPANI-ADLKLS
L0ET75_LIBCB/134-225------------------ELSKGSLPGSWKV--------SSGMVRCDMYLTLTNLGSG---LRGGTRNCYGK---LSLMG
D7A619_STAND/144-240-------------------IRPADLAGAWDL------AETAGTPICRVELTDQPAGSD-TFKLTLGNVCAASV-IALAPD
B9JCF7_AGRRK/88-179------------------DVTKESMVGSWKV--------SNGGSSCDMFLTLTNLGSG---SRGGTRGCAGE---LTAMG
B2IIP2_BEII9/58-161------------------SPELAALGGQWDLVREGATTRPNERQTCRLTLSLRPMADQ-GLLLLLPSSCRKTMPIVASIN
INH_PHOLL/31-125------------------LPHASELKGVWQL--------SDKHQQCDVLLTDHPLPEGSIWSLNGDNDCLAYM-FGEVPA
A8HSQ4_AZOC5/216-311------------------LVRPEEIIGDWNL------ARVAGTPICRWTFLETPVPGG--FSVTAAPGCDGL--GGFVPK
D3UWD0_XENBS/7-99------------------LPEPAELKGLWQL--------SDGNQVCSIELTDTRLPEGSIWALKGDS-CLTEL-MGNPVE
D7A6A1_STAND/101-194--------------------ARTQLAGTWKY------GWDNGQKSCKVTLSTDRGMSG--FAANADVDCPND---IFMTK
A7IJ58_XANP2/96-191------------------SPAQGQLSGAWTF------AWDDGRNSCPLRLSTDRGLSG--LSAQADVSCPSE---IFMTK
F2IVD7_POLGS/89-181------------------EIGRNDMLGGWKL--------ASGADNCMLFMTLTTWTGG---YRANTRGCSDP--ALAGIS
Q4KBR9_PSEF5/33-125------------------LADPSELVGHWQL-----QQAAAPAEGCTLDLLHNA-------ALGDGADCLSKW-LGEAAV
B8ENL7_METSB/40-136------------------LDNPDAVLGQWDL------TLEGSNKACRLTFRAERVRGG--FYLGMPAGCRRGLAPLANAA
OMP19_BRUA2/86-177------------------DLTPGAVAGVWNA--------SLGGQSCKIATPQTKYGQG---YRAGPLRCPGE---LANLA
Q6NCK6_RHOPA/26-120--------------------MKKDMVGQWEL------ATTERSKTCVVTLTSEPAAKG--LKLTLEPDCAKTLPFTKAIV
C5B0G7_METEA/96-186--------------------GRSSVVGSWNA--------TDAAGSCKVSLSSTPSLDL---YKASAAGCSNK--DLAKVS
OMP19_AGRFC/89-180------------------DVTKESMVGNWRV--------SNGGANCDMFLTLTNLGSG---SRGGTRGCSGE---LTAMG
A7ICM0_XANP2/55-153------------------EIKVEEVVGEWDL------ARQAGTPVCRVTLLDQPAGNGRGKALAIASGCDPAL-LRFGPV
Q6D3G0_PECAS/7-101------------------LPSASELSGAWQL--------RGGEQHCEVVLHNTQLVDN-IWRLDGDAQCLKAL-LSDVPA
Q11CW1_CHESB/87-178------------------PIEKNSLLGSWTV--------NSGGSSCQMFLTLTKYGNS---SRGGTRGCSNE---LANMR
Q3SVU0_NITWN/46-140---------------------KKNMIGQWEL------STTERSRTCVVTLKGETAPQG--LKLDLEPGCVASLPFTKDIA
INH_PSESM/31-124------------------LPNPAELSGQWRL-----SLQGKADDACELQLNTEAP------QLTGDVACAAKW-LHEPPA
G8PR93_PSEUV/107-201-------------------VKADDMVGKWTV------YLNSGDRVCQLNLSTEPKDEG---FAASFNHCMDG--DLFFVS
INH_PSEAE/30-128------------------LLSASDLAGQWTL------QQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRW-LPSEPR
A8HUE1_AZOC5/101-195-------------------GAKEALSGAWTL------AWDSGQHTCPVQLTTDRGMNG--LSARADVSCPSE---IFMTK
B9JTT1_AGRVS/79-170------------------DFTKEQMVGNWRV--------ANGQSSCDMFLTLTNLGGG---SRGGTRGCVGP---LTTMG
OMP19_RHILO/88-179------------------DLSAAAVAGVWNA--------SVSGQSCKIATPQTKFGAG---FRAGPLHCPAP---IDGIK
Q2K9N4_RHIEC/132-229------------------LPTFRSLAGTWAM------QRPGGEKLCSVTLDGTLDTDG-HAPLSLSADCAANV-ARLKLA
B1LU92_METRJ/105-195---------------------RSAVVGSWDA-------RDATGANCKVTLSSTPALDL---YRATASGCANK--DLARVS
E0SC34_DICD3/24-118------------------LPSAAELSGQWVL--------SGAEQHCDIRL-NTDVLDGTTWKLAGDSVCLQKL-LPEAPV

PF09023

SSPC_STAA8/3-107FSS-IDNEEIIYILDYDDTQHILMQTSSKQGI-----GTSRPIVYER

PF09022

Q2G2R7_STAA8/1-105LYN-KNNSSIVIEIFIPNDNKILLTIMNTEAL-----GTSPRMTFIK
Q5HKF5_STAEQ/1-105LSN-VDNPNIIIEMILINSKKLVFNAISKEGL-----GTSPKITFTK

PF02974

B9JDQ6_AGRRK/142-236LWA-MEGFGLV-LMGGDGSSL-SFDMQPDGSFKTSDEEEGEPMLL--
L0ET75_LIBCB/134-225YWD-VVGHQLV-LKDRNGNTIVSLNKVADNRFEGV-TKDNQPVSVSR
D7A619_STAND/144-240RWR-LDGGDLW-LLTAKGEGL-RFARQEDGGWEKVPPGDGEPLMLTR
B9JCF7_AGRRK/88-179SWA-VSGKQVL-LKDRDGNQIGSLYKTADSRYDGS-TASGQPISLSR
B2IIP2_BEII9/58-161AWQPMTRHRID-FTDRNGATLMTFFSTADGRFEAV-GPDAENYAL--
INH_PHOLL/31-125GWR-PTPDGLT-ITDEQGSGLAFFAHEPDG-WFARF-ADGRELMIK-
A8HSQ4_AZOC5/216-311AWH-LEGGNVV-VTAATGNGLVRFARQEDGGWAKV-PERGRPLLMMR
D3UWD0_XENBS/7-99GWR-PTPDGIT-LTDDDGNSLAFFGHESEQ-WVAYL-VDGRELVM--
D7A6A1_STAND/101-194GWD-VWGNEIV-LQNHLGKVTARLQPAGSGQYDGVATGDGGKVTLTR
A7IJ58_XANP2/96-191GWD-MMGSDIV-LQNHQGKITARLQPSGPNHYVGLISESNQKVSLSR
F2IVD7_POLGS/89-181AWD-LNGKLVV-LKGAAGDQVAQLYASGGDRFSGQ-TATGRAISFSR
Q4KBR9_PSEF5/33-125GWF-PEPDGIA-ITGREGSKIIFFSRQKEGLYEARLKADG-LIVLQR
B8ENL7_METSB/40-136AWSLPGGEHLI-IGDVVGAPILDFALQPDGALAAI-SPAGENYKL--
OMP19_BRUA2/86-177SWA-VNGKQLV-LYDANGGTVASLYSSGQGRFDGQ-TTGGQAVTLSR
Q6NCK6_RHOPA/26-120AWD-VKGLDIVRLETADGDSVIDFTEVESGIFEGH--RDGEGIYIL-
C5B0G7_METEA/96-186AWD-FRDGEVY-LYQPGGTVTARL-RQAGGGLEGALSKSGAQLSMAR
OMP19_AGRFC/89-180SWE-VSGKMVL-FKNRSGDTIGRVYKSADARFDGT-TNSGQPLSLSR
A7ICM0_XANP2/55-153AWD-IEGGNIL-VRGDTDTAVIRFARQEDGGWART-PERGRPLLMNR
Q6D3G0_PECAS/7-101GWR-PTPDGIT-LTKEQGQSVAFFSKEKEG-YTLIL-PDGSTRTLHK
Q11CW1_CHESB/87-178AWD-LSGNQVV-MYDESGNTVARLYSSGGGRLDGT-TTGGTPVSVSR
Q3SVU0_NITWN/46-140AWT-VAGLDIVRLQTATGESVIDFTEVESGILEGR--RENDGIYILQ
INH_PSESM/31-124GWF-PTPDGLA-LTDNQGNRLIHLNRMDEQTYEARL-PGGELLILGR
G8PR93_PSEUV/107-201NWR-MKGQELV-LFDNFSRAKGSMRMTEWNRWEGQLASNSKPITIAR
INH_PSEAE/30-128AWR-PTPAGIA-LLERGGLTLMLLGRQGEGDYRVQK-GDGGQLVLRR
A8HUE1_AZOC5/101-195GWD-MMGSDIV-LQDHLGKVTARLQPAGPNAFIGTLVENNQAIALNR
B9JTT1_AGRVS/79-170AWD-VANKQLM-LKDRDGNVIGTLYKTADNRFNGS-TSAGQPVSLSR
OMP19_RHILO/88-179SWN-VAGKQLT-LYDENGGSLARLYSSGGSKFDGQ-TSNGQPISLTR
Q2K9N4_RHIEC/132-229VWN-IDGFGLT-LMSHDGSSL-SFDMRADGNFDKSREEGGKPLSLVR
B1LU92_METRJ/105-195AWD-FRDGEVY-LYQPGGSVAARL-RQGGGGLEGALTKSGAALALNR
E0SC34_DICD3/24-118GWR-PTPDGLT-LTQADGSAVAFFSRNRDR-YEHKL-VDGSVRTLKK

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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