Sequence alignment for CL0367

PF00280

Q4FE24_SOLTU/44-95--KLSWPELIGVPTKLAKEIIEKENSLITNVQIL..LNGSP.VTKDF..SC..................IEFVFLIT
Q9FIY2_ARATH/10-72--KSSWPELLGAKGEDAKEVIERENPKMKAV.II..LDGTV.VPEIF..ICSRVYVWV...ND..CGI.VVQIPIIG
Q6E668_ZEADI/12-71--KTSWPEVVGLSVEEAKKVILKDKPDADIV.VL..PVGSV.VTADY..RPNRVRIFV........DI.VAQTPHVG
Q07459_SOLTU/44-107--KQFWPELIGVPTKLAKEIIEKENSLINNVQIL..LNGSP.VAMDY..RCNRVRLFD...NI..LGS.VVQIPRVA
A2ZIU0_ORYSI/22-84--KDSWPELVGVSSEEAKTKIGEERPELDVQ.VV..PADAF.VTTDY..NAGRVRVFV...DS..DDK.VARPPKIG
Q6TCI2_BRADI/10-69--TKSWPEVVGLSIKEAKKVILKDKPDADIV.AL..PVGGK.VTDDF..LSNRVRIFV........DT.GGEIPRAG
ICI3_HORVU/10-72--KTEWPELVEKSVEEAKKVILQDKPEAQII.VL..PVGTI.VTMEY..RIDRVRLFV...DR..LDN.IAQVPRVG
A2YCB3_ORYSI/15-82--KSSWSELVGKKGSEAMAVILRERPDITRAILV..PQDAV.ITDDY..CCNRVRILVDCGDCG.DAS.VTAVPMIG
A5C3X3_VITVI/8-70--KSSWPELVGVHGEAAAAIIERENLNVKAG.VV..KEGTL.VTTDF..RCDRVRVWV...DS..YGI.VSMVPKIG
Q8LNY0_ZINEL/5-67--KSSWPELVGEKGEAARLTIEKENPLVNAI.VL..LDGTG.VTKDF..RCDRVWVWV...NS..KGI.VIRTPIIT
A5Y6Z7_SALMI/9-71--KDSWPELVGVCGREAAKVISEENSLVNPL.IW..GENQP.ITRDF..RCDRVFVFV...ND..SGI.VTRVPMVF
Q9M4C9_HORVU/15-74--KTSWPEVAGKSIEEAKEIILKDMPEADIV.VL..PAGSP.VTLDF..RTNRVRIFV........DT.VASTPHIG
ICI_LUMTE/24-86--KTSWPELVGETLEEAKAQILEDRPDAVIK.VQ..PEHSP.VTYDY..RPSRVIIFV...NK..DGN.VAETPAAG
Q9SN16_ARATH/30-96--KVDWPELNGVKGLEAKRIIEHDNPKVVVV.II..PDDVA.VLAVN..CCNRVIVRVPV.NNCPNGP.VSNFPHIG
Q93XD6_IPOBA/8-70--TSSWPELVGVDAFLAKSTIEKENSDLYVV.FL..FQGCP.ETREY..VFNRVRLIV...DC..SNV.VIRTPVIG
Q6Z711_ORYSJ/5-69--KVRWAEVLGELAPLAVTQISNDRPDVAVE.VLLRDAAAV.VSPEF..NPKRVRVFV...DN..NFI.VVKVPVIS
A2XZJ6_ORYSI/11-71--KRSWPEVVGMTMEEAKAAILKDKPDADIV.VL..PVGAP.MTRDL..RPNRVRIFG.......SAT.VAETPRVG
Q40416_9SOLA/31-94--KETWPELIGVPAKLARETIQKENSKLTNVPSV..LNGSP.VTQDL..RCDRVRLFV...NL..LDI.VVQIPRVG
ICI1_SOLTU/44-107--KLRWPELIGVPTKLAKGIIEKENSLISNVHIL..LNGSP.VTLDI..RCDRVRLFD...NI..LGY.VVDIPVVG
Q9SNV6_AMAHP/14-76--KQEWPELVGEYGYKAAAIIERENPNVRSI.VK..HERSG.FTKDF..RCDRVWVVV...DS..TGV.VVRTPRVT
Q5ZDX2_ORYSJ/13-72--KTEWPELVGLTIEQAKAKIKADRPDLQVE.VL..PVGTI.ILGVV..VPNRVILWV........DT.VAEIPKIG
ICI_LINUS/7-69--KNAWPELVGKSGNMAAATVERENRNVHAI.VL..KEGSA.MTKDF..RCDRVWVIV...ND..HGV.VTSVPHIT
Q6Z710_ORYSJ/14-76--KTAWPELVGWVELNAAFQINRDRPDVHVA.FY..MVGTQ.LPTDH..DDLRVIIVS...DA..GTV.VVRTPVVG
Q42162_ARATH/1-63--EDSWSVLTGTNGDYAAVVIERENPTDNSS.VI..LDGSP.VTTDF..RCDRVRVFV...DG..NRI.VVKTPKSG
A5C3X4_VITVI/8-73--KTSWPELLGVQKAVAKATVERENPYVTDVEIV..LEGTI.VPADLVPVCTRVRIWV...DE..SGI.VTRVPVVG
Q5EII1_ORYSJ/8-67--KTEWPELVCRMIKEAKEKIKADRPDLKIE.VV..PVGTI.VTQEF..DENRVRIWV........DT.VAKTPTIG
Q4FE23_SOLTU/44-107--KQRWPGLIGVPAQYAKGIIEKENTLIADVQII..LNGSP.VTADF..SCNRVRIAV...NI..LDY.AVSMPVVG
Q8LNY1_ZINEL/4-67--KRSWPELVGARGTTAEARFERENPRVNAI.VV..VEGRDMVTADF..RCDRVWVWV...NS..NGV.VLRTPSIG
Q8GT64_CITPA/66-128--KSSWPELVGKNGEVAAAIIEKENPCVHAI.VL..LEGTP.VTKDY..RIDRVRVWV...NK..KGK.VIRVPRIG
ICI1_SOLPE/48-111--KQFWPELIGVPALYAKGIIEKENPSITNIPIL..LNGSP.VTKDF..RCDRVRLFV...NI..LGD.VVQIPRVT
A2X0C3_ORYSI/20-83--KSSWPELVGWPEFYAALKIIDERPDVTVY.MF..RDGDDLPPPEH..DPARVAIFV...DG..DIR.VSRTPVVG
Q2QNZ5_ORYSJ/19-68--KTSWPEVVGLPVEEAKKVILKDMPDADIV.VL..PAGSP.........AGNVSV.............DSEAPVMT
Q43421_CUCMA/4-67--KLSWPELVGKDGEEAVKIIQQENPSLDVI.LM..PRGQNWATKDY..RPNRVRVFN...DD..SGK.VNSIPRIG
ICIC_HORVU/15-77--KTSWPEVVGMSAEKAKEIILRDKPNAQIE.VI..PVDAM.VPLNF..NPNRVFVLV...HK..ATT.VAZVSRVG
A5Y6Z6_SALMI/11-73--KSSWPELVGVAGDVAVATIEKENPSVNAV.VI..TPETV.WTPAI..FCDRVLVFV...DA..NGI.VNSVPTVG
A0MF11_ARATH/23-85--KYRWPELVGKNGQLAKMTIERENPNVLAI.VL..RYGEK.RIENF..CCNRVFVYL...GS..NGQ.VADAPMIG
A2X0C0_ORYSI/6-71--KASWPEVVGWPATAAVTQINGDRPDVSIE.VI..PDGAT.VPPGF..DANRVRVFFNAGDA..VGP.VMRTPFVG
IER1_SOLLC/56-119--KESWPELLGTPAKFAKQIIQKENPKLTNVETL..LNGSA.FTEDL..RCNRVRLFV...NL..LDI.VVQTPKVG
Q0Z7S3_9SOLN/53-116--KQSWPELVGKPAEYAKKIIEKENPIAHDIRVL..FPGML.RPSNY..VCGRVFLVV...DW..EAI.VKITPIMG
ICI1_SOLLC/48-111--KQMWPELIGVPTKLAKEIIEKENPSITNIPIL..LSGSP.ITLDY..LCDRVRLFD...NI..LGF.VVQMPVVT
Q8LLB0_HORVU/13-72--KTSWPEVVGLTIKEAKEIILKDKPEADIV.VV..PVGSA.VTEDF..RPNRVRIFV........GT.VVETPHVG
A0BEL5_PARTE/9-71--KQSWPECVGKTAEEAKQIILADNAELHVQ.LL..PENSM.VTMDY..RTDRVRVFH...DE..NGV.VKQAPHIA
ICIS_VICFA/1-62--RTSWPELVGVSAEEAR.KIKEEMPEAEIQ.VV..PQDSF.VTADY..KFQRVRLYV...DE..SNK.VVRAAPIG
A2ZDD6_ORYSI/5-67--KSSWPEVVGLPAEAAKYIILNDRPDVHVV.VL..RVGSI.VTTEV..DPKRVRVFV...NN..SAT.VAQVPKIG
Q9ZV16_ARATH/11-73--KNSWPELLGTNGDYAASVIKGENSSLNVV.VV..SDGNY.VTEDL..SCYRVRVWV...DE..IRI.VVRNPTAG
Q8LLA8_HORVU/15-74--KSSWPELVGKSIEDAREVILKDMPEVDIE.VH..PTDSV.VSADW..RSNRVRILV........DT.VATTPHIG
Q67YR6_ARATH/1-62--KSSWPELVGRRGEEVKEIIDRENTKVTAK.II..SENAV.VLAVV..ICDRVYVRV...ND..QGI.VTRTP.IS
Q6Z9F3_ORYSJ/4-66--KSSWPELVGVLATLAATQIGKDRPDVAVE.VL..PPGAP.LTPDF..NDKRVRVFM...DD..NGI.VFKIPVIG
Q9S9F3_FAGES/7-69--KQEWPELVGERGSKAAKIIENENEDVRAI.VL..PEGSA.VPRDL..RCDRVWVFV...DE..RGV.VVDTPVVM
A0EEX1_PARTE/315-377--KTSWPECVGKTIQQAIQIIKKDGPNLQIQ.VL..PEGSI.VTMDY..RRDRVRIFH...NP..KGI.VIQIPSIG
ICI1_PHAAN/30-92--KTSWPELVGVTAEQAETKIKEEMVDVQIQ.VS..PHDSF.VTADY..NPKRVRLYV...DE..SNK.VTRTPSIG
ICIC_HIRME/7-70--LKSFPEVVGKTVDQAREYFTLHYPQYDVY.FL..PEGSP.VTLDL..RYNRVRVFY...NP..GTNVVNHVPHVG
Q41361_SAMNI/17-79--KNTWPELCGARGEEAAATVETENPSVTAV.IV..PEGSI.VTTDE..RCDRVRVWV...DE..NGI.VTRVPVIG
Q7M1Q1_MOMCH/6-68--KSSWPQLVGSTGAAAKAVIERENPRVRAV.II..KVGSG.ATKDF..RCDRVRVWV...TE..RGI.VARPPTIG
ITH5_CUCMA/6-68--KSSWPHLVGVGGSVAKAIIERQNPNVKAV.IL..EEGTP.VTKDF..RCNRVRIWV...NK..RGL.VVSPPRIG
Q3S492_SOLTU/54-117--KQSWPELVGKSAGYAKQVIEKENSIVHEVKLL..FPGMP.KPLNY..VCGRVFLVV...NF..KLV.VQVTPSMG
HPI_HEVBR/8-70--KNSWPELVGTNGDIAAGIIQTENANVKAI.VV..KEGLP.ITQDL..NFNRVRVFV...DE..NRV.VTQVPAIG
A0BS59_PARTE/5-67--KKEWPEAVGKTVEEAKQLILADDAGIMIQ.VL..AEGSP.TTRDF..RMNRVRIFH...ND..KNI.VVQLPRRG
Q96465_HORVU/9-68--KTEWPELVGCTIKEAKEKIKADRPDLKVV.IV..PVGSI.VTQEI..DLNRVRVWV........DK.VAKVPKIG
A2X0C4_ORYSI/17-81--KTAWPEVVGWDGMSAVMKIHRDRADVRVE.VH..TVGES.VPPGF..DGERVLVFLND.DN..AAT.VAQTPVVG

PF11720

A3UJ96_9RHOB/41-100CAAEAYQVLVGQPVGGVHTDSL.....PRPHRVY--GLGDP-VTMDY--RPNRLNIVV---GE--NGV-IAEV-KCG
A4EHH9_9RHOB/28-87CGARDYADLIGQDATALERVLL.....LGPVRVI--RPGDM-VTMDF--RPDRVNFKI---DE--NET-IQGV-DCG
Q3J6I4_RHOS4/31-90CGAVRLTGLVGQPAEVLETIRF.....TQPVRVV--RPGDM-VTMDF--SPARLTVET---NE--AGR-IVRL-ACG
A3K2I5_9RHOB/30-87CAAGQFAGLVGQPVAEAAVV.......PEPKRII--RPGDM-ITEDY--RLDRTNVYL---DA--QDV-ITTL-KCG
A3VBP8_9RHOB/33-90CPAPAFQEFVGQPYANTRIE.......WPDLRII--RPGDA-VTRDY--LENRLNVDL---DE--NEV-ITRI-WCG
Q8PRC9_XANAC/73-137CDATQVQSLVGQPLTDAVGEQARSDAGAKSVRVL--KPGQM-TTMEF--NGERLNLEV---DA--KNV-ISSV-RCG
Q2L1M1_BORA1/45-109CDAQSAQSWLGQPFTDSSSADVRKRSGSDTVRVL--KPGQV-MTLEY--NPGRVNIIV---DG--QGK-ISAI-RCG
Q7WJS4_BORBR/50-114CDAQPVQNLVGQKYSDSVGNDALRRSNSGSMRLL--KPGQV-MTMEY--NARRLNIIL---EG--NGS-ISAL-RCG

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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