Sequence alignment for CL0400

PF10439

Q8DW08_STRMU/6-50FE..................NFDEIDMNHLASIEGG.................FDVKGVAASYLAM-GTA..........
Q03D42_LACC3/1-65MK..................DVSVLNVTELAQVTGG.......GIGKCIAGTVGGGVMGALTGGGL-GSK..........
Q8DVP7_STRMU/6-70FE..................QFNVMDNEALSTVEGG.......GMIRCALGTAGSAGLGFVGGMGA-GTV..........
LAFX_LACJO/1-57MK......................LNDKELSKIVGG..............NRWGDTVLSAASGAGT-GIK.........A
Q8DWB6_STRMU/1-76ME......WRINTME.LNVNNYKSLTNDELSEVFGG.............DKQAADTFLSAVGGAAS-GFT......YCAS
Q9A139_STRP1/2-63IK..................FAEEIQKEELFHIIGG..........YSATDCKNHLIGGITSGAIA-GGV..........
B9DTX8_STRU0/1-88MEKLLFQKRKVDILM.NSNIEFDSIDTELLEKVIGG.........KNNWQANVSGILAAGAAGAAI-GAPVCGLACGYIG
Q8DSA3_STRMU/1-61ME..............KQYNNFKILNTDALENIQGG.....GRAPRCAALVGASIYDGLAVVGDPV-GVA..........
Q9PCT5_XYLFA/1-72MDIAILVYRDVYLNSFKESLKMRELTFEEALKVDGQ..................GWAGAFLTGAGT-GAY..........
Q8DWB7_STRMU/6-52FE..................QFDVMDSQTLSTVEGG...................KVSGGEAVAAI-GIC..........
Q8DSB5_STRMU/7-81LE..................QFDAMDVDMLAAVEGG.......NWGQCIVGTGSSALAGGLAGAGT-GAA..VSAPAAEG
Q5FI73_LACAC/1-64ME..................KLMVLNEEKLSYVIGG....GNPKVAHCASQIGRSTAWGAVSGAAT-GTA..........
A5CZV1_PELTS/2-49LE..................QSDELSEEELEQVAGG.................GVLALVALGLYAA-GAT..........
LAFA_LACJO/1-75MK..................QFNYLSHKDLAVVVGG.........RNNWQTNVGGAVGSAMIGATV-GGTICGPACAVAG
B7GL23_ANOFW/1-61MR..................MFQELNHVELQGIDGG.......SWKSHVVNLVGVVSGFGTTGAVI-GGS..........
Q1WQX7_LACS1/2-54MK..................EFTVLTECELAKVDGG..........KRGPNCVGNFLGGLFAGAAA-GVP..........
Q8DSB1_STRMU/23-94LD..................QFETMDTDMLAAVEGGFGWDSIWRGFKCVAGTAGTIGTGALGGSAT-GGL..........
Q8DRN0_STRR6/6-65MS..................QFEIMDTEMLACVEGG................GCNWGDFAKAGVGG-GAV........RG
Q1WQX8_LACS1/1-65MK..............NLDKRFTIMTEDNLASVNGG..KNGYGGSGNRWVHCGAGIVGGALIGAIG-GPW..........
D9SPP3_CLOC7/1-67MT..................NFETCTMDELVLIDGG.....DWSWKSLAQSTVSGAVGGAIAGSAG-GTV..........
Q5M2W2_STRT2/6-65IE..................NFNTLDLETLASVEGG................GCSWGGFAKQGVAT-GVG........NG
Q8DSA2_STRMU/6-58LE..................QFDVMDSQVPSAIEGG................GCSWKGADKAGFSG-GVG..........
B2JC36_NOSP7/1-67MA..KILISDLHSVG.EKEVLLSELSDEEMATIQGG............SNAPAEVLAVCAVGGAVL-GGP..........
Q035H7_LACC3/1-62MS.................YNYRQIDDFQLSGVSGG..........KKKFDCAATFVTGITAGIGS-GTI..........
H8KYJ8_FRAAD/2-55ME......................LDSTQVDQIQGG..........ASATAIIGAVIGGALTGGAI-GST..........
L0KBX3_HALHC/1-64MD.............NLASVGMVELNEEELMMVDGG.............FFSVTDLGWAAAGGAIS-GAI..........
Q8DS95_STRMU/6-69FE..................QFNVMDNEALSAVEGG..............GRGWNCAAGIALGAGQ-GYM......ATAG
B7GL22_ANOFW/1-86ME...GVVFTMELML.EKNGSISFLSEEELKEIDGG...RGSWTNAVIGAGTLSPIVASAVRGAQQ-GVR.........F
Q03D40_LACC3/1-65MS..................KTRKLSELELQQFVGG..........SDSNKCLMGLVGGWAIGGLN-GAG.........S

PF03047

A8B010_STRGC/1-38MK-----KKNKQNLLPKELQQFEILTERKLEQVTGG--------------------------------------------
Q8DSB2_STRMU/1-30MN-----T........QKLNQFETMDTETLATIEGG--------------------------------------------
I6L8Z2_STRMU/1-32MK-----K......TLSLKNDFKEIKTDELEIIIGG--------------------------------------------
CSP1_STRR6/1-31MK-----N.......TVKLEQFVALKEKDLQKIKGG--------------------------------------------
Q5M2V9_STRT2/1-30MA-----N........NTINNFETLDNHALEQVVGG--------------------------------------------
Q7CRB4_STRR6/1-30MD-----K.......KQNLTSFQELTTTELNQITGG--------------------------------------------

PF04369

K7WBI6_LACLC/1-60MK---------------NQLNFNIVSDEELSEANGG-----------KLTFIQSTAAGDLYYNTNT-HKY----------
Q7X5J4_LEUME/1-53MQ---------------DKTNFKILSDSELSTISGG-----------.......KGVLGWLSMASS-ALT----------
K7VRC1_LACLC/1-60MK---------------NQLNFNIVSDEELAEVNGG-----------SLQYVMSAGPYTWYKDTRT-GKT----------

PF04604

A0A0C6G0Z1_STRPY/1-48MK----NSKD......ILTNAIEEVSEKELMEVAGG-------------KK.GSGWFATITDDCPN....----------
A0FL76_9ENTE/1-51MM----NAT.......ENQIFVETVSDQELEMLIGG-------------A..GRGWIKTLTKDCPNVISS----------
G2GW18_STRSL/1-56MK----STNNQSIAEIAAVNSLQEVSMEELDQIIGA-------------...GNGVVLTLTHECNL.ATW----------
LANB_STRP9/1-50MT----KEH.......EIINSIQEVSLEELDQIIGA-------------G..KNGVFKTISHECHL.NTW----------
A0SXQ1_STRMG/1-50MK----QSN.......EMLELIQEVSLDELDQVIGG-------------M..GKGAVGTISHECRY.NSW----------
O85355_BUTFI/1-47MN----K.........ELNALTNPIDEKELEQILGG-------------...GNGVIKTISHECHM.NTW----------
A0SXQ2_STRMG/1-53MK----KGTQLYL...EALEALQEIKVEELDTFIGG-------------...GGRASNTISSDCRW.NSL----------
LANA_STRMG/1-53MN----KLNS......NAVVSLNEVSDSELDTILGG-------------NRWWQGVVPTVSYECRM.NSW----------
LANA_RUMGN/1-47MR----N.........DVLTLTNPMEEKELEQILGG-------------...GNGVLKTISHECNM.NTW----------
P71449_9LACT/1-50MK----EQ........NSFNLLQEVTESELDLILGA-------------KG.GSGVIHTISHEVIY.NSW----------
A6MER2_STRMC/1-53MK----NNNKICQ...DALESLQELKLEEVDELLGG-------------...AGHGVNTISAECRW.NSL----------
Q50848_KOCVA/1-46MT----..........NAFQALDEVTDAELDAILGG-------------...GSGVIPTISHECHM.NSF----------
LANNA_STASI/1-56ME----NSKVMKDI..EVANLLEEVQEDELNEVLGA-------------KK.KSGVIPTVSHDCHM.NSF----------
O31051_STRPY/1-51ME----EKMCL.....GALNALQEFQIEELDNLLGG-------------...RGHGVNTISAECRW.NSL----------
Q09II3_STRSL/1-55MA----KQQMNLVEI.EAMNSLQELTLEELDNVLGA-------------...GGGVIQTISHECRM.NSW----------

PF08129

Q9L9U6_ENTFL/1-57MK------------------QYKVLNEKEMKKPIGG----------ESVFSKIGNAVGPAAYWILK-GLG----------
Q8VPA2_ENTFL/1-57MK------------------QYKVLNEKEMKKTIGG----------ESVFSKIGNAVGPAAYWILK-GLG----------

PF10439

Q8DW08_STRMU/6-50............ALGGLACTTPV
Q03D42_LACC3/1-65..TKNLYVIGGLGILGGVGGAIY
Q8DVP7_STRMU/6-70..TLPVVGTVSGAALGGWSGAAV
LAFX_LACJO/1-57CKSFGPWGMAICGVGGAAIGGYF
Q8DWB6_STRMU/1-76NGVWHPYILAGCAGVGAVGSVVF
Q9A139_STRP1/2-63..GAGMATLGVGGVAGAFAGAHV
B9DTX8_STRU0/1-88AKTAITLWAGVTGATGGFK....
Q8DSA3_STRMU/1-61............MAAGTIAAGSF
Q9PCT5_XYLFA/1-72..AGGLIAEVPGAVVGAVVGGVI
Q8DWB7_STRMU/6-52........ATASAAIGGLAGATL
Q8DSB5_STRMU/7-81GGLGPIAGAAIGWDLGAISGAGL
Q5FI73_LACAC/1-64......VGQAVGALGGALFGGSM
A5CZV1_PELTS/2-49.........AVGVGVGAVAGAAL
LAFA_LACJO/1-75AHYLPILWTAVTAATGGFGKIRK
B7GL23_ANOFW/1-61......FGGPLGAAAGGFVGAHY
Q1WQX7_LACS1/2-54...........LGPAGIVGGANL
Q8DSB1_STRMU/23-94..TLPIIGHVSGGIIGGISGAGV
Q8DRN0_STRR6/6-65LQLGIKTRTWQGAATGAAGGAIL
Q1WQX8_LACS1/1-65...........SAVAGGISGGFT
D9SPP3_CLOC7/1-67..TLPVVGTVGGGVGGGILGAVG
Q5M2W2_STRT2/6-65LRLGIKTRTWQGAVAGAAGGAIV
Q8DSA2_STRMU/6-58.....GLIGAGGNPVGGVLGIAG
B2JC36_NOSP7/1-67..........AGFLGGAFVGAIL
Q035H7_LACC3/1-62...TGLAGGPFGIIGGAVVGGNL
H8KYJ8_FRAAD/2-55......VGAAIGGPIGAGFGGAF
L0KBX3_HALHC/1-64..TYGSIGGAPGAVAGAFTGAAL
Q8DS95_STRMU/6-69GTAFLGPYAIGTGAFGAIAGGIG
B7GL22_ANOFW/1-86GRLGGPWGVVAGAVVGAVVGGYL
Q03D40_LACC3/1-65LSGFGPAGVTIGGLYGTLSGILT

PF03047

A8B010_STRGC/1-38----------------DVRSNKI
Q8DSB2_STRMU/1-30----------------MTWAEIG
I6L8Z2_STRMU/1-32----------------SGSLSTF
CSP1_STRR6/1-31----------------EMRLSKF
Q5M2V9_STRT2/1-30----------------SGWMDYI
Q7CRB4_STRR6/1-30----------------GWWEEL.

PF04369

K7WBI6_LACLC/1-60------VYQQTQNAFGAAANTIV
Q7X5J4_LEUME/1-53------GPQQPNSPWLAKIKNHK
K7VRC1_LACLC/1-60------ICKQTIDTASYTFGVMA

PF04604

A0A0C6G0Z1_STRPY/1-48----------------.SVFVCC
A0FL76_9ENTE/1-51----------------ICAGTII
G2GW18_STRSL/1-56----------------TKKLKCC
LANB_STRP9/1-50----------------AFLATCC
A0SXQ1_STRMG/1-50----------------AFLATCC
O85355_BUTFI/1-47----------------QFIFTCC
A0SXQ2_STRMG/1-53----------------QAIFSCC
LANA_STRMG/1-53----------------QHVFTCC
LANA_RUMGN/1-47----------------QFLFTCC
P71449_9LACT/1-50----------------NFVFTCC
A6MER2_STRMC/1-53----------------QAIFSCC
Q50848_KOCVA/1-46----------------QFVFTCC
LANNA_STASI/1-56----------------QFVFTCC
O31051_STRPY/1-51----------------QAIFTCC
Q09II3_STRSL/1-55----------------QFLFTCC

PF08129

Q9L9U6_ENTFL/1-57-------NMSDVNQADRINRKKH
Q8VPA2_ENTFL/1-57-------NMSDVNQADRINRKKH

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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