Sequence alignment for CL0405

PF03754

Y2741_ARATH/67-178TTPPEWLLNVMRREEN..GYNP.KLISTRQ.L-----YKTDL.KKTEARL...SVPFKQ---VKTPDFLTEDETRII...
Y1592_ARATH/161-278PQEPQWLLQVMSRMNG..AGDP.KLIIEKN.L-----DSNDV.DPRQNRL...SIPINT---VIQNDFLTLDESRLI...
Y1593_ARATH/158-265REMRWWLRQVMKDMRA...EDL.TLILEKT.L-----STTDVITTTHGRF...SMHFNR---LISNDFLKPEERSIL...
Y3485_ARATH/207-323RDTPKWLVKVMRDMKE..AKDA.KLIFEKT.L-----FVTDI.NPTQNRL...SMPFNN---LLQNDFLTSVESRII...
Y2142_ARATH/58-169SSIPDWLVKVMRKENG...YDP.KLIIKRRVL-----CTTDL.RKNQGCL...SMHLSK---LEKSDFLTEDETRFL...
Y2467_ARATH/107-221EPTPGWLISLMRSKNGGDVEDNSKKIIDKE.L-----FQTDV.DPHQSRL...SIPVSQ---IVELEFLNHEEKRAI...
Y2172_ARATH/127-239RTPTEWLIDVMREVNG...MDA.KLIFVKV.L-----PNSDV.DELQTRL...MMPWKQ---ILDMDFLNEEELEKI...
Y3961_ARATH/185-307RETPEWLLDVMRKMKG..AEGPIKLIYEKT.L-----TATDV.KPSESRL...LIPFNK---LLRNDFLTPEESRAIA..
Y5850_ARATH/244-384TETPEWVFQAMGHMNA.DAETP.KLIFERT.L-----FKSDV.NSNLSRL...LIPFQK---LIRNDFLTPEECRAMQED
Y2881_ARATH/40-157TTMISSLSKRLKIDEC.KNQDP.EQNPNRV.A-----SSPSL.CHVKSKRPQKGVSNKP---ILDMDFLNEEELEKI...
Y2146_ARATH/7-115MQQPELLLKSMNKLNG...YHP.QLIIPKKTL-----FKCDL.DDKQSRL...QVSSMH---MENSGFLTEDEKRTI...
Y1203_ARATH/184-298REAPEWLVKMMGTMQG..SEGP.RLIYEKT.L-----TETDV.KPVQSRL...LMPFNT---LIRNDFLTPVELRIL...

PF02362

NGA2_ARATH/23-129--------------------------FDKV-V.....TPSDV-GKL.NRL...VIPKQH...AERYFPL..DNSTTN---
REM23_ARATH/19-114--------------------------FFKV-L.....KRSDM-SSE.DTR...AIPYDF...VINF........SDN---
Y5809_ARATH/18-113--------------------------FFKI-L.....RSADL-SSE.IMR...GIPLNF...IKSI........SEE---
Y5800_ARATH/20-115--------------------------FFKI-L.....RREDH-STE.MMR...MIPHHL...IRSI........SDK---
Y3209_ORYSJ/37-142--------------------------FDKV-V.....TPSDV-GKL.NRL...VIPKQH...AEKYFPL..DAASNE---
Y3701_ARATH/25-116--------------------------F...-......QRADL-SSD.CMR...ALPYSF...ISKV........SEK---
Y3216_ORYSJ/150-240--------------------------FFKV-M.......IGG-FRR.Q.M...TIPYKF...A.EN........FRD---
Y1664_ARATH/9-100--------------------------FMKP-F.......ISE-KSS.KSL...EIPLGF....NEY........FPA---
LEC2_ARATH/171-272--------------------------CEKE-L.....KNSDV-GSL.GRI...VLPKRD...AEANLPK..LSDKEG---
REM14_ARATH/237-333--------------------------F.VA-N.....VAPST-LRY.DTL...YLPKRF...MREN.........GV---
Y1086_ORYSJ/6-97--------------------------FASA-R.......LNA-TNQ.SYL...PVPITL...ATAY.........EM---
REM1_ARATH/162-259--------------------------FITA-R.....VTRYS-LLH.DRL...DLSRNF..TLLFG.........GH---
REML1_ARATH/252-347--------------------------TLTV-T.....ITPDS-LEH.GRL...RLPLQF...MTEN.........SM---
REML1_ARATH/582-676--------------------------FLTL-T.....ITPDS-LKH.GRL...RLPLQF...MIEN.........SM---
Y3896_ARATH/30-122--------------------------FFKL-V.....LPSTM-KDK.M.M...KIPPRF...V.KL........QGS---
REM4_ARATH/169-266--------------------------YLVA-H.....VTPSS-LLR.DNM...CVLSKF...ARSN.........GL---
RAVL3_ARATH/178-286--------------------------FQKE-L.....TPSDV-GKL.NRL...VIPKKY...AVKYMPF..ISDDQS---
Y5772_ARATH/13-105--------------------------FLKI-F.......NSH-EDS.QLL...VIPRSY...N.RY........YPN---
Y3440_ARATH/16-107--------------------------FFTV-F.......VSH-FSS.EFM...VIPVSY...YD...........HI---
REM17_ARATH/154-250--------------------------F.VA-K.....VSAWC-LSN.DRL...YIPLSF...ARLN.........GL---
RAVL4_ARATH/183-289--------------------------FEKT-V.....TPSDV-GKL.NRL...VIPKHQ...AEKHFPL..PLGNNN---
ARFR_ARATH/128-230--------------------------FVKI-L.....TASDT-STH.GGF...SVLRKH...ATECLPS..LDMTQA---
REM8_ARATH/149-244--------------------------F.SQ-S.....VTHSN-ISN.DLV...TLPRDF...AKRN.........GL---
REM14_ARATH/131-226--------------------------F.SA-N.....VAPSS-LRY.DLM...LFPMGF...VREN.........GV---
ARFM_ORYSJ/128-234--------------------------YAKQ-L.....TQSDA-NNG.GGF...SVPRLC...ADHIFPA..LNLDDD---
REM12_ARATH/193-289--------------------------FMTL-T.....LTHDN-LIK.SRR...YLPLSF...TRDN.........GL---
REM12_ARATH/341-436--------------------------YVTL-T.....LTPED-VRA.CTL...ILPSQF...MKAN.........GI---
Y3204_ORYSJ/248-349--------------------------FVAI-M.....KHSNV-NSRRACL...VIPKRY...ASAH........F..---
Y3205_ORYSJ/29-119--------------------------FHRQ-M.......SAN-FEH.S.M...IIPNKF...L.DQ........FGG---
Y5828_ARATH/127-218--------------------------FVKS-M.....VRSHV-YSC.FWL...GLPSRF...CADN........F..---
VRN1_ARATH/5-98--------------------------FFHK-L.....IFSST-IQE.KRL...RVPDKF...VSKF.........KD---
IDEFH_ORYSJ/297-399--------------------------LRKE-L.....TNSDV-GNI.GRI...VMPKRD...AEAHLPA..LHQREG---
REM17_ARATH/617-714--------------------------F.VA-N.....VTASS-LNY.DRL...YLPLSF...VSSN.........GL---
REM8_ARATH/249-346--------------------------FVKL-T.....PTLNS-LEI.GKQ...HLPVSF...TKGN.........GL---
ARFJ_ORYSJ/125-227--------------------------FAKT-L.....TQSDA-NNG.GGF...SVPRFC...AETIFPE..LDYSSE---
ARFT_ARATH/126-224--------------------------FTKV-L.....TASDT-SAY.GGF...FVPKKH...AIECLPP...LPL..---
ARFQ_ARATH/119-221--------------------------FAKI-L.....TPSDA-NNG.GGF...SVPRFC...ADSVFPL..LNFQID---
FUS3_ARATH/92-194--------------------------FQKE-L.....KNSDV-SSL.RRM...ILPKKA...AEAHLPA..LECKEG---
Y2608_ARATH/38-144--------------------------FEKP-L.....TPSDV-GKL.NRL...VIPKQH...AERYFPL..AAAAAD---
Y4474_ORYSJ/326-431--------------------------WIKK-E.....ISNYM-LEN.GNI...SLPGIF...CKSI.........GL---
REM3_ARATH/154-251--------------------------YCLL-G.....LTASN-LRL.NRV...SFTKHF...SRAN.........GL---
Y3160_ORYSJ/25-122--------------------------LFLT-FSVLCLMPIMY-MAS.H.K...TIPNEF...L.HN........FGG---
Y4469_ORYSJ/21-118--------------------------QLKV-L.....VPSSF-RKM.......RICDEL...AAQLGV....GVGGG---
REM20_ARATH/11-102--------------------------FFKV-F.......LVE-SAS.ESL...MIPLPF...M.AF........LAD---
Y3701_ARATH/202-292--------------------------FKIT-I.....RKSYL-KFL.......AIPKHF...VDDH........I..---
VRN1_ARATH/244-338--------------------------FRVV-L.....RPSYL-YRG.CIM...YLPSGF...AEKY.........LS---
ABI3_ARATH/572-674--------------------------LQKV-L.....KQSDV-GNL.GRI...VLPKKE...AETHLPE..LEARDG---
Y3845_ORYSJ/137-228--------------------------FVKP-M.....LHSHV-VRG.FWL...GLPRHF...CETY........L..---
Y3204_ORYSJ/29-119--------------------------FHLQ-M.......SAN-FGH.S.M...TIPNKF...L.DH........FGG---
REM1_ARATH/285-386--------------------------FLIV-K.....YTPSR-ETT.GQL...SLPVSF...TRNN.........SI---
Y5625_ARATH/46-159--------------------------FEKS-L.....TPSDV-GKL.NRL...VIPKQH...AEKYFPL..NAVLVS---
ARFA_ORYSJ/122-224--------------------------FCKI-L.....TPSDT-STH.GGF...SVLRRH...ANECLPP..LDMSMA---
VAL1_ARATH/295-395--------------------------FEKT-L.....SASDA-GRI.GRL...VLPKAC...AEAYFPP..ISQSEG---
Y4469_ORYSJ/143-236--------------------------FLTV-L.......LPG-IMD.K.M...RIPDKF...VRDY........ITG---
ARFA_ARATH/124-226--------------------------FCKT-L.....TASDT-STH.GGF...SVLRRH...ADDCLPP..LDMSQQ---
Y3918_ARATH/130-221--------------------------FTKP-M.....LQSHV-TGG.FWL...GLPLPF...CKAH........M..---
REM16_ARATH/223-321--------------------------FLVF-M.....KRSHV-VSK.CFL...TIPYKW...CVKN.........ML---
Y1934_ORYSJ/216-325--------------------------FDKT-V.....TPSDV-GKL.NRL...VIPKQH...AEKHFPL..QLPSAG---
Y3216_ORYSJ/453-543--------------------------FFKV-M.......IGD-FHK.R.M...TIPDKF...A.RH........FKG---
Y5698_ARATH/10-105--------------------------FFKV-F.......LPE-FGS.HEL...VIPPAF...I.DM........LEK---
Y5013_ARATH/14-110--------------------------FFKV-Y.......LPD-ESG.DDM...VLPISF...T.RF........LPK---
REML1_ARATH/97-193--------------------------FVTF-T.....LAPVD-GRH.CRL...RLPMQF...TREN.........GI---
RAV2_ARATH/188-293--------------------------FEKA-V.....TPSDV-GKL.NRL...VIPKQH...AEKHFPL..PSPSPA---
REM3_ARATH/286-383--------------------------FLTV-T.....LKHYM-IQS.GQL...RLRRSF...VREN.........GI---
REM17_ARATH/437-532--------------------------F.VG-S.....VNPSS-LYK.DQL...YLPRNF...VSSN.........FL---
Y1235_ORYSJ/289-381--------------------------CVIR-M.....STMHV-YYS.FMM...RFPTGF...SRQH........L..---
Y6112_ORYSJ/56-154--------------------------FTAL-I.....AKSHL-HPK.FQM...WIPPRF.....QH.........RL---
REM17_ARATH/728-824--------------------------F.VG-S.....VTASS-IKK.DKL...YLWKSF...VSSN.........GL---
Y7832_ORYSJ/124-227--------------------------FVKT-L.....MISDF-DFR.IRF...SAPMAD...AKGVFPP..LVDAKA---
REM16_ARATH/25-116--------------------------FTQL-L.......LPG-FHN.R.L...VIPRKF...S.TH........CKR---
ARFT_ORYSJ/120-233--------------------------FEKQ-L.....SPADV-TSN.ALV...L...PA...GAEHVLPP.LDIAAY---
REM17_ARATH/268-362--------------------------F.EG-S.....VTPSS-LRN.DLL...YLPRSF...VNSN.........RL---
Y1235_ORYSJ/21-121--------------------------FFKV-L.......VGD-FKQ.R.L...KIPPNF...C.KHIPWEESRKAKG---
REM4_ARATH/307-403--------------------------ILTF-D.....LKPYV-FRS.CQF...FLPASF...AREN.........GI---
REM6_ARATH/391-491--------------------------FLTL-T.....VTPSS-IRS.SRL...YLSKKF...ISVN.........KM---
ARFM_ARATH/124-228--------------------------FSKI-L.....TASDV-SLS.GGL...IIPKQY...AIECFPP..LDMSQP---
Y2531_ARATH/19-114--------------------------FFKV-L.....QRVDI-SSE.NMR...ALPYDF...VRSF........SNN---
REM6_ARATH/285-378--------------------------TQSC-F.....IFDHV-AK........SLPRNF...VRSD.........GL---
REM14_ARATH/387-485--------------------------FVTL-N.....LTPYN-ILR.SAL...RLPIPF...TRMN.........GI---
REM6_ARATH/132-227--------------------------F.SQ-S.....VTTSN-LMR.DSV...GVPRDF...AKRY.........GF---
ARFC_ARATH/159-261--------------------------FCKT-L.....TASDT-STH.GGF...SVPRRA...AEDCFPP..LDYSQP---
ARFV_ORYSJ/128-230--------------------------FAKT-L.....TQSDA-NNG.GGF...SVPRYC...AETIFPK..LDYRAD---
REM9_ARATH/149-244--------------------------F.SQ-S.....VTHSN-ISR.DAV...SVPRDF...VKRS.........GF---
REM5_ARATH/152-247--------------------------F.SQ-S.....VTASN-LTR.DLV...GIPRDF...AKRY.........GL---
Y3204_ORYSJ/416-516--------------------------YVSI-M......NKSN-VGT.DGLYIIIFGRQF...ATRY..........L---
B9H4U4_POPTR/147-248--------------------------FCKT-L.....TASDT-STH.GGF...SVPRRA...AEKLFPP..LDYTMQ---
M4D481_BRARP/318-418--------------------------FLTR-K.....FTPSR-FKT.GQL...YISMFSSGVLRES.........GI---
VIV_ORYSJ/538-633--------------------------.QKV-L.....KQSDV-GSL.GRI...VLPKEA....EVHL.......PEL---

PF09217

C5BFF1_EDWI9/15-166-------------------...NAYVYIKR-L-----SANDT-GATGAHQVGTYMQHSA----AEYLFPSINKTDEC---
J9ZE30_LEPFM/15-163-------------------.RRETLWFAKR-L-----SANDT-LANNAHQAGPYIPKNI----LFTLFPSLDRPEDK---
H2ISN5_RAHAC/12-163-------------------GNPEWVIYMKR-L-----SANDT-GATGGHQVGIYIPKIT----RDTLFPSINRVDCD---
A5FU96_ACICJ/14-166-------------------GVPGAVWFAKR-L-----AANDT-LATGAHGAGPYIPKEF----LFSVFPDLNHPEEE---
Q9JZ51_NEIMB/26-167-------------------ANKSIAVYCRY-I-----RPNDV-GTTGSHQSGFYIQKHF----SDDLFDVVCQ.KGT---
A8AM36_CITK8/13-166-------------------STSDTYMFIKR-L-----SANDT-GATGGHQVGIYIPSGI----VEHLFPSINHTRDL---
A8G987_SERP5/12-169-------------------SSDNWYIHIKR-L-----SANDT-GASGGHQSGVYLPNNS----ANFLFPSINRIDEE---

PF03754

Y2741_ARATH/67-178....................HENAMKIRDNGVPVNFVD-PEL-------NKHVLELRKWKM......KGNW----IYVFV
Y1592_ARATH/161-278...................DEDEITNEGNMGVAAFLVD-QRT-------KKWNMGFKQWFMTT.DSGSSYW----SFVLR
Y1593_ARATH/158-265....................EEDTYNDETMGVGAILVD-QRS-------QKWSVILKRWGQ..........----NYFLS
Y3485_ARATH/207-323....................KEDINNNKKIGVGAILVD-QRS-------VKWGVMLKRWELKK.ESGKGSW----NYNLI
Y2142_ARATH/58-169....................DEDFLKAKRDGLKVFLVD-PES-------DKHVVYLKKWNG......NTVW----KYVLS
Y2467_ARATH/107-221....................EEDANRVRKEGVDAILVD-SHL-------REFPVNLRLRDM......RGIL----LYNLV
Y2172_ARATH/127-239..................DRHHKKISASDKGADVIVVN-SKG-------LQRKLKLKRWDM......TSTS----NYVLG
Y3961_ARATH/185-307.................IDKEEEEEDTKKIGVKTIIVN-QFS-------KEWSLRFLIWVMKKKKSGNGTL----YYTLN
Y5850_ARATH/244-384KDKDDEDISVGTILVCQAKQEDEDKDDEDIGAGTILVN-QRF-------KMWGLRFKIWGMEK.DSGHGTL----NYILN
Y2881_ARATH/40-157..................DRHYKKISDSDKGADVILVN-SEG-------LQRKLKLKRWDM......TSTS----NYVLG
Y2146_ARATH/7-115...................EAQKMKKRRTAGLRVAFID-PES-------QQYVLELHKWTK..........----SYAFV
Y1203_ARATH/184-298....................LELEDDTD..GVGATLVD-PWE-------VKWGVILKKREMKK.YSGKGSL----NYAII

PF02362

NGA2_ARATH/23-129-------------------DSN.......KGLLLNFED.RSG.......NSWRFRY..SY.....WNSSQS.....YVMT
REM23_ARATH/19-114-------------------E.........LSGDMKFRV.QWG.......NSWKVKI.........SKNPRF....YFMEK
Y5809_ARATH/18-113-------------------E.........LSAKMLLKV.SWG.......SSWPIKI.........CRNPSF....YFMEK
Y5800_ARATH/20-115-------------------S.........SSFKMVLRV.PWG.......RSWQVKI.........SKNPNF....HYMED
Y3209_ORYSJ/37-142-------------------..........KGLLLSFED.RTG.......KPWRFRY..SY.....WNSSQS.....YVMT
Y3701_ARATH/25-116-------------------D.........FSYKMVIRA.QWG.......KTWDVEV.........SKNPTY....YYIET
Y3216_ORYSJ/150-240-------------------Q.........IQGTIKLKA.RNG.......NTCSVLV.........DKCSNK.....LVLT
Y1664_ARATH/9-100-------------------P.........FPITVDLLD.YSG.......RSWTVRM.........KKRGEK.....VFLT
LEC2_ARATH/171-272-------------------IV............VQMRD.VFS......MQSWSFKY..KFW...SNNKSRM.....YVLE
REM14_ARATH/237-333-------------------DKR.......RG.EMILMN.EKG.......KSWTLDL..KL.....KKSCGT.....SLIR
Y1086_ORYSJ/6-97-------------------QHG.......DS..LRLKT.SHG.......LKIKIRI.........KEAAST.....LYMT
REM1_ARATH/162-259-------------------QKT.......C..EIDVVD.EQG.......RRWTMKL..AK.....NISSGV.....FYIR
REML1_ARATH/252-347-------------------NKP.......G..EITLLG.TDG.......AKWMASL..L......LEKKGR.....MSLG
REML1_ARATH/582-676-------------------NKP.......G..EITVLG.KDG.......AKWLVSL..LL....ERRGRMS.....LDAS
Y3896_ARATH/30-122-------------------K.........LSEVVTLET.PAG.......FKRSIKL.........KRIGEE.....IWFH
REM4_ARATH/169-266-------------------DRR.......EC.EIDLRD.EHE.......KSWTLLL..RH.....NKKTGQ.....AFMR
RAVL3_ARATH/178-286-------------------EKETS..EGVEDVEVVFYD.RAM.......RQWKFRY..CY.....WRSSQS.....FVFT
Y5772_ARATH/13-105-------------------P.........LPQTAVLKN.PEG.......RFWNVQW.........TKSQEV....IISLQ
Y3440_ARATH/16-107-------------------PHR.......FPKTVILRG.PGG.......CSWKVAT.........EIKDDE.....VLFS
REM17_ARATH/154-250-------------------NKI.......NSKKIYLQN.EEG.......RSWKLVL..RH.....DKSGMQ.....TFVQ
RAVL4_ARATH/183-289-------------------VSV.......KGMLLNFED.VNG.......KVWRFRY..SY.....WNSSQS.....YVLT
ARFR_ARATH/128-230-------------------TPT.......QE..LVTRD.LHG.......FEWRFKH..IF.....RGQPRR.....HLLT
REM8_ARATH/149-244-------------------DKG.......MH.EIVLMN.EEG.......KSWESEV..RS.....RMS.GQ.....VFIV
REM14_ARATH/131-226-------------------.VG.......SG.KIVLMN.EKG.......RSWNFNL..RQ.....KPSCGT.....VYVR
ARFM_ORYSJ/128-234-------------------PPV.......QS..LTMGD.LQG.......DSWEFRH..IY.....RGTPRR.....HLLT
REM12_ARATH/193-289-------------------DKP.......G..MIFLLG.KTG.......RKWEANL..LR....EASGRIV.....L.TG
REM12_ARATH/341-436-------------------NKL.......G..KKTLLG.QNR.......KKWFAYL.........LSKSGF.....VALG
Y3204_ORYSJ/248-349-------------------.PL.......ESQTITLQRQGKN.......KKWYPMFYI.......RKDGSG.....YMLY
Y3205_ORYSJ/29-119-------------------K.........ISRTVELES.PKG.......NVYVVKV.........SKHMNK.....TVLQ
Y5828_ARATH/127-218-------------------.PE.......ETMEIELED.EEG.......EVYEAVY.........IGRRAG.......LS
VRN1_ARATH/5-98-------------------E.........LSVAVALTV.PDG.......HVWRVGL.........RKADNK.....IWFQ
IDEFH_ORYSJ/297-399-------------------VM............LKMDD.FKL......ETTWNFKY..RFW...PNNKSRM.....YVLE
REM17_ARATH/617-714-------------------DKM.......NGKEIVLLN.EEG.......LSWKFNL..KY.....NQAGKH.....TYVR
REM8_ARATH/249-346-------------------IHP.......G..EIILVD.KDR.......VEWSMKL..QV....DNRGGMH.....IFGG
ARFJ_ORYSJ/125-227-------------------PPV.......QS..VCAKD.VHG.......VEWTFRH..IY.....RGTPRR.....HLLT
ARFT_ARATH/126-224-------------------.PA.......QE..LLAKD.LHG.......NQWRFRH..SY.....RGTPQR.....HSLT
ARFQ_ARATH/119-221-------------------PPV.......QK..LYVTD.IHG.......AVWDFRH..IY.....RGTPRR.....HLLT
FUS3_ARATH/92-194-------------------IP............IRMED.LDG......FHVWTFKY..RYW...PNNNSRM.....YVLE
Y2608_ARATH/38-144-------------------AVE.......KGLLLCFED.EEG.......KPWRFRY..SY.....WNSSQS.....YVLT
Y4474_ORYSJ/326-431-------------------VEE.......TTITLMINS.SRGRSSSSSSRSWEVAC.........SVNKNGYG.CCNLLP
REM3_ARATH/154-251-------------------TKR.......CC.MIDLMN.LSG.......ESWTLGL..RH.....NKRTGQ.....AFIR
Y3160_ORYSJ/25-122-------------------K.........IPKSIKLET.RSG.......LTFDVQV.........TKNSGR.....VVLQ
Y4469_ORYSJ/21-118-------------------GAP.......RAATARVAS.PLG.......KAWDVGV.........VRDGDG....RAFLG
REM20_ARATH/11-102-------------------P.........LPKTVKLQG.LGG.......KLWTVSL.........KKISGA.....AYLT
Y3701_ARATH/202-292-------------------.PN.......KSKIFTIRH.PNG.......GSWKVLC.........LVREIR.....TIFS
VRN1_ARATH/244-338-------------------GIS.......GFIKVQLAE...........KQWPVRC.........LYKAGR.....AKFS
ABI3_ARATH/572-674-------------------IS............LAMED.IGT......SRVWNMRY..RFW...PNNKSRM.....YLLE
Y3845_ORYSJ/137-228-------------------.PK.......HDAIVTLLD.EKD.......EQFDTNY.........LAYKNG.......LS
Y3204_ORYSJ/29-119-------------------T.........LSRTIELVS.PKG.......IVYIVKV.........TEHMNK.....TILQ
REM1_ARATH/285-386-------------------NKT.......G..EVILLN.QDG.......RKWSSYL..QITGLGRGAGSEW.....FYLR
Y5625_ARATH/46-159-------------------SAAADTSSSEKGMLLSFED.ESG.......KSWRFRY..SY.....WNSSQS.....YVLT
ARFA_ORYSJ/122-224-------------------TPT.......QE..LITKD.LHG.......SEWRFKH..IY.....RGQPRR.....HLLT
VAL1_ARATH/295-395-------------------IP............LKIQD.VRG.......REWTFQF..RYW...PNNNSRM.....YVLE
Y4469_ORYSJ/143-236-------------------ENL.......NSNMAIILS.PLG.......KSWRVEL.........DKDQSG.....VFLG
ARFA_ARATH/124-226-------------------PPW.......QE..LVATD.LHN.......SEWHFRH..IF.....RGQPRR.....HLLT
Y3918_ARATH/130-221-------------------.PK.......RDVIMTLVD.EEE.......EESQAKY.........LAQKNG.......LS
REM16_ARATH/223-321-------------------ITR.......QEVVMQVDQ...........TKWEMKFNIFG.....ARGSGG.......IS
Y1934_ORYSJ/216-325-------------------GES.......KGVLLNFED.AAG.......KVWRFRY..SY.....WNSSQS.....YVLT
Y3216_ORYSJ/453-543-------------------V.........ISKTIKLEP.RSG.......YTFDVQV.........TKKLNI.....LVLG
Y5698_ARATH/10-105-------------------P.........LPKEAFLVD.EIG.......RLWCVET.........KTEDTEERFCVF.FT
Y5013_ARATH/14-110-------------------S.........LPETVTVRS.ISG.......NIWKLEL.........KKCCGDDDTEKFVMV
REML1_ARATH/97-193-------------------NKP.......G..KIYLVG.KDG.......SKWLANL..LL.....ENNRGR.....MTLG
RAV2_ARATH/188-293-------------------VT........KGVLINFED.VNG.......KVWRFRY..SY.....WNSSQS.....YVLT
REM3_ARATH/286-383-------------------KEA.......E..EIILVD.KNG.......VEWPSYV..SS.....SKQRRE.....FYMA
REM17_ARATH/437-532-------------------DKR.......CS.EIVLKN.ERG.......EKRTLVL..KH.....FKKDL......TFLK
Y1235_ORYSJ/289-381-------------------.PR.......ERTDVVLRD.PGG.......KVWSVLY.........IPNTRD......RLS
Y6112_ORYSJ/56-154-------------------AEP.......EARTAAVLH.SGG.......KSWATSY.........CGHLKM.....KKLD
REM17_ARATH/728-824-------------------DKG.......CK.KIILKN.KWG.......REWKLVL..KH.....YKSNCF.....TIIK
Y7832_ORYSJ/124-227-------------------VQP...........LLVKD.LHG.......SPMTFDY.........GRKGKR.....VTLA
REM16_ARATH/25-116-------------------K.........LPQIVTLKS.PSG.......VTYNVGV.........EEDDEK....TMAFR
ARFT_ORYSJ/120-233-------------------QTA.......RLFDVR..D.LRG.......KRFEFVH..IW.....DKKRCR.....YMLG
REM17_ARATH/268-362-------------------DKR.......CS.EIVLKN.EQG.......VKWPLVL..KR.....FKSV.......TYLP
Y1235_ORYSJ/21-121-------------------LKE.......ASMAATLEG.PSG.......RTWLVVI.........RRTAEG.....TFFT
REM4_ARATH/307-403-------------------VEA.......G..EVTVLN.KDG.......IEWKSHL..VN.....IKGRDQ.....FY.N
REM6_ARATH/391-491-------------------ERA.......GGKKITLLD.KNG.......EEWPVTL..LM.....DKRYTR.....MVLG
ARFM_ARATH/124-228-------------------IST.......QN..LVAKD.LYG.......QEWSFKH..VF.....RGTPQR.....HMFT
Y2531_ARATH/19-114-------------------E.........LSRKMKIKA.RWG.......SSWEVEI.........CKNPRF....YFMEK
REM6_ARATH/285-378-------------------IKG.......SN.KIVLMN.EGA.......RTWTLIL..KF.....RDSRRS.....FYSR
REM14_ARATH/387-485-------------------NEE.......T..KMTLLD.KHG.......MKWLTTL..RL....VDYKRKR.....LGMV
REM6_ARATH/132-227-------------------NIG.......RH.EIVLMN.EEG.......KPWESEV..IS.....YKS.GK.....VIVA
ARFC_ARATH/159-261-------------------RPS.......QE..LLARD.LHG.......LEWRFRH..IY.....RGQPRR.....HLLT
ARFV_ORYSJ/128-230-------------------PPV.......QT..VLAKD.VHG.......VVWKFRH..IY.....RGTPRR.....HLLT
REM9_ARATH/149-244-------------------SKG.......RH.EIVLMN.EEG.......KSWESEV..KS.....YMS.GA.....VYLV
REM5_ARATH/152-247-------------------NIG.......RH.EIVLMD.EEG.......NTWESEV..KS.....YKS.GR.....VFIA
Y3204_ORYSJ/416-516-------------------PEG.......EQTLTLLMT.GKS.......NAWQVKM.........RPRSGD....AQMIT
B9H4U4_POPTR/147-248-------------------PP........T.QELVVRD.LHD.......NTWTFRH..IY.....RGQPKR.....HLLT
M4D481_BRARP/318-418-------------------K.........KSGEMTLLD.NDG.......RKWPSYL..HKT...GQPGGEW.....CYIR
VIV_ORYSJ/538-633-------------------KTR.......DGVSIPMEDIGTS.......QVWNMRY..RFW...PNNKSRM.....YLLE

PF09217

C5BFF1_EDWI9/15-166-------------------NPS-------LMITARTSS-HSY-------PENQVRVIYYNNKFFG...KTRNERRITRWG
J9ZE30_LEPFM/15-163-------------------NPE-------VRFRLQIDS-HQG-------ERREIRAVWYNNRRRG...KTRDEARITGFG
H2ISN5_RAHAC/12-163-------------------NPS-------IPLSAKIVS-HDI-------EEQTVNAIYYNSKLAKQQKKGRNESRITSWG
A5FU96_ACICJ/14-166-------------------NPD-------CWFDLYIDS-HA.-------DRRRIRAIWYNNRLRG...GTRNEARLTNFG
Q9JZ51_NEIMB/26-167-------------------NKT-------ISIKINWQD-GSV-------TNSNFK..YYGQ.......GTRNEARITGFG
A8AM36_CITK8/13-166-------------------NPS-------VMLNAHTSS-HNC-------PDSEARAIYYNGRFFG...KTRNEKRITRWG
A8G987_SERP5/12-169-------------------NPS-------VGLTAKIIS-HEV-------NDSQVRAVYYNSKLRNLNPKGRNETRITCWG

PF03754

Y2741_ARATH/67-178-------KGWKNVLDA--------------------------------------------------------------
Y1592_ARATH/161-278-------GEWSNVVET--------------------------------------------------------------
Y1593_ARATH/158-265-------CGWNDVVKA--------------------------------------------------------------
Y3485_ARATH/207-323-------CGWNDVVEA--------------------------------------------------------------
Y2142_ARATH/58-169-------HGWNNVIDK--------------------------------------------------------------
Y2467_ARATH/107-221-------AGWNQVVTD--------------------------------------------------------------
Y2172_ARATH/127-239-------LGWNKVVTD--------------------------------------------------------------
Y3961_ARATH/185-307-------RGWNGVVSG--------------------------------------------------------------
Y5850_ARATH/244-384-------WDWNDVVKG--------------------------------------------------------------
Y2881_ARATH/40-157-------SGWNKVVTE--------------------------------------------------------------
Y2146_ARATH/7-115-------KGWNKVVDK--------------------------------------------------------------
Y1203_ARATH/184-298-------CGWNDIVEA--------------------------------------------------------------

PF02362

NGA2_ARATH/23-129.......KGWSRFVKDKKLD.AGDIVSFQ.R...D-SCNKDKLYIDWRRRP---------------------------
REM23_ARATH/19-114.......SGWEKFVIDNALG.DHEFLTFT..HK.G-Q.MSF..TVKIFNKD---------------------------
Y5809_ARATH/18-113.......KGWDQFLSDNGLG.NDEFLTFT..HQ.G-N.MCF..TVDIYQID---------------------------
Y5800_ARATH/20-115.......RGWNQFVNDNGLG.ENEYLTFT..HE.A-N.MCF..NVTIFEAD---------------------------
Y3209_ORYSJ/37-142.......KGWSRFVKEKRLD.AGDTVSFGRGV..G-EAARGRLFIDWRRRP---------------------------
Y3701_ARATH/25-116.......RGWDLFVSDNALG.QNEFITFT..HR.G-N.MVF..HVNIYEQN---------------------------
Y3216_ORYSJ/150-240.......KGWAEFANSHDIK.MGDFLVFR..YT.G-N.SQF..EVKIFDPS---------------------------
Y1664_ARATH/9-100.......VGWENFVKDNNLE.DGKYLQFI..YD.R-D.RTF..YVIIYGHN---------------------------
LEC2_ARATH/171-272........NTGEFVKQNGAE.IGDFLTIY......-EDESKNLYFAMNGNS---------------------------
REM14_ARATH/237-333.......RGWRSFCSANGLR.AGSIITFK..LI.K-..KSGTLVLCLLSNE---------------------------
Y1086_ORYSJ/6-97.......TGWKEFAEATGLE.TGETILFR..MS.S-R.SKA..RVMLLNRQ---------------------------
REM1_ARATH/162-259.......LGWGNFCCANGLT.QGDLCKFK..LF.Q-..NEERPVLWLCPQE---------------------------
REML1_ARATH/252-347.......KGWKDFAKANGLK.TGDSITLE..PI.W-..EDRTPVLSIKSSS---------------------------
REML1_ARATH/582-676.......SGQETREAEKNRE.ESSS.......L.W-ELEKRTYCPRKRDSS---------------------------
Y3896_ARATH/30-122.......EGWSEFAEAHSIE.EGHFLLFE..YK.E-N.SSF..RVIIFNVS---------------------------
REM4_ARATH/169-266.......GGWRSFCRNNGIK.AGSICRFK..LV.Q-..SGIKPVLQLCPNA---------------------------
RAVL3_ARATH/178-286.......RGWNGFVKEKNLK.EKDIIVFY......-.TCDVPNNVKTLEGQ---------------------------
Y5772_ARATH/13-105.......EGWVKFVKDNGLI.DRDFLLFT..YD.G-S.RSF..WVRIHRNG---------------------------
Y3440_ARATH/16-107.......QGWPKFVRDNTLN.DGDFLTFA..YN.G-A.HIF..EVSIFRGY---------------------------
REM17_ARATH/154-250.......SGWRRFCSENGIR.QGQ.YTFK..LV.R-..KSAPPVIRLCRAK---------------------------
RAVL4_ARATH/183-289.......KGWSRFVKEKRLC.AGDLISFK.R...S-NDQDQKFFIGWKSKS---------------------------
ARFR_ARATH/128-230.......TGWSTFVSSKRLV.AGDAFVFL......-RGENGDLRVGVRRLA---------------------------
REM8_ARATH/149-244.......GGWKSLCSENKLK.GGDSCTFK..LL.Q-..NAKTPVFQLCSRI---------------------------
REM14_ARATH/131-226.......GGWVSFCDANGLQ.AGDIYTFK..LI.K-..RGGTLVLRLLPKG---------------------------
ARFM_ORYSJ/128-234.......TGWSKFVNAKQLV.AGDTVVFM..WCGA-PAPERKLLVGVRRAA---------------------------
REM12_ARATH/193-289.......KGWKEFAMANGLK.SGELFTLE..AI.L-..EKGTPMLSLVNTQ---------------------------
REM12_ARATH/341-436.......SGWKGFCEANGVK.TGESFNLE..YI.D-E.QDTTPVFKFCSNS---------------------------
Y3204_ORYSJ/248-349.......GCWKNFVRDNHVK.EGDMCIFH..LTKF-TGGEFGATVHLLRET---------------------------
Y3205_ORYSJ/29-119.......CGWEAFVDAHQIE.ENDSLLFR..HI.K-N.SRR..ASGVQERN---------------------------
Y5828_ARATH/127-218.......GGWKRFALDHKLD.DGDALLFE..LV.E-P.KKF..KIYVFKGN---------------------------
VRN1_ARATH/5-98.......DGWQEFVDRYSIR.IGYLLIFR..YE.G-N.SAF..SVYIFNLS---------------------------
IDEFH_ORYSJ/297-399........STGGFVKQHVLQ.TGDIFIIY.....K-SSESEKLVVRGEKAI---------------------------
REM17_ARATH/617-714.......PGWSRFCDANGMS.QGQQFTFK..LV.Q-..KHGPPVMYLSLSE---------------------------
REM8_ARATH/249-346.......NDWKSFCAANEVG.AGESLTLE..LI.R-..GGLSPLFKFFSKI---------------------------
ARFJ_ORYSJ/125-227.......TGWSPFVNKKQLT.AGDSIVFM......-RDEGGNIHVGLRRAK---------------------------
ARFT_ARATH/126-224.......TGWNEFTTSKKLV.KGDVIVFV......-RGETGELRVGIRRAR---------------------------
ARFQ_ARATH/119-221.......TGWSKFVNSKKLI.AGDSVVFM......-RKSADEMFIGVRRTP---------------------------
FUS3_ARATH/92-194........NTGDFVNAHGLQ.LGDFIMVY.....Q-DLYSNNYVIQARKAS---------------------------
Y2608_ARATH/38-144.......KGWSRYVKEKHLD.AGDVVLFH.R...H-RSDGGRFFIGWRRRG---------------------------
Y4474_ORYSJ/326-431.......SGWKRFCQANGLL.VGDVCTFS......-.VVEATLWHVAIDRV---------------------------
REM3_ARATH/154-251.......GRWRSFCHANELK.PGSFYRFK..LV.R-..NGTRPLLQLCFKV---------------------------
Y3160_ORYSJ/25-122.......SGWASYVSAHDLK.IGDFLVFK..YS.G-D.SQL..KTLIFDSS---------------------------
Y4469_ORYSJ/21-118.......RGWAEFAAAHGLG.VGWFVVLR......-.HGGGVLAVEAFDTT---------------------------
REM20_ARATH/11-102.......RGWPKFAEEHELK.NGEFMTFV..YD.G-H.RTF..EVSVFDRW---------------------------
Y3701_ARATH/202-292.......GGYSKLAREFPLM.VGDKCTFK..LI..-..KPFEFVLLTSKKN---------------------------
VRN1_ARATH/244-338.......QGWYEFTLENNLG.EGDVCVFE..LL.R-T.RDFVLKVTAFRVN---------------------------
ABI3_ARATH/572-674........NTGDFVKTNGLQ.EGDFIVIY.....S-DVKCGKYLIRGVKVR---------------------------
Y3845_ORYSJ/137-228.......GGWAGFALDHGLL.DGDATVFQ..LV.K-P.TTF..KVHIIRAT---------------------------
Y3204_ORYSJ/29-119.......CGWEAFVDAHHIE.ENDSLLFR..HI.E-N.SRF..EVLILDSD---------------------------
REM1_ARATH/285-386.......RGWREMCEANGVG.VNDSFKLE..LV.W-..EGANPMFKFCSKI---------------------------
Y5625_ARATH/46-159.......KGWSRFVKDKQLD.PGDVVFFQ.R...H-RSDSRRLFIGWRRRG---------------------------
ARFA_ORYSJ/122-224.......TGWSTFVTSKKLI.SGDAFVYL......-RSETGEQRVGVRRLV---------------------------
VAL1_ARATH/295-395........GVTPCIQSMMLQ.AGDTVTFS......-RVDPGGKLIMGSRKA---------------------------
Y4469_ORYSJ/143-236.......GGWLQFLSFHGIS.RGDVVIFR..YE.G-N.LVF..KISVFGPN---------------------------
ARFA_ARATH/124-226.......TGWSVFVSSKKLV.AGDAFIFL......-RGENEELRVGVRRHM---------------------------
Y3918_ARATH/130-221.......GGWRGFAIDHQLV.DGDAVVFH..LI.A-R.TTF..KVYIIRVN---------------------------
REM16_ARATH/223-321.......TGWKKFVQDNNLR.EGDVCVFE..PANS-ETKPLHLNVYIFRGE---------------------------
Y1934_ORYSJ/216-325.......KGWSRFVKEKGLH.AGDVVGFYRSAA.S-AGDDGKLFIDCKLVR---------------------------
Y3216_ORYSJ/453-543.......SGWESFVNAHDLN.MGDFLVFK..YN.G-D.FLL..QVLIFDPS---------------------------
Y5698_ARATH/10-105.......KGWQSFANDQSLE.FGDFLVFS..YD.G-D.SRF..SVTIFAND---------------------------
Y5013_ARATH/14-110.......NGWKRIVKDEDLK.GGDFLEFE..FD.G-S.SCF..HFCIYEHR---------------------------
REML1_ARATH/97-193.......DGWKSFVKANGLK.TGDTYTFK..LL.W-..EDTTPVLSLCFEE---------------------------
RAV2_ARATH/188-293.......KGWSRFVKEKNLR.AGDVVTFE.R...S-TGLERQLYIDWKVRS---------------------------
REM3_ARATH/286-383.......HGWIRFCEANKLK.TGETFTLE..FV.R-G.EGTTPMLKFCSEA---------------------------
REM17_ARATH/437-532.......KGWTSFCQVNRIK.AGDSFKFK..LV.G-..TWNKPVLSLCPTE---------------------------
Y1235_ORYSJ/289-381.......RGWCAFARGNCLE.EGDYCVFE..LV.A-A.AEF..RVHIFRVV---------------------------
Y6112_ORYSJ/56-154.......AGWSEFAVDNRLL.VGDACVFELVAM.G-AAGGLEFQVQILRGG---------------------------
REM17_ARATH/728-824.......RGWTSFCQGNGLK.AGDSFKFK..LV.G-..TGEKPVLSLCPAE---------------------------
Y7832_ORYSJ/124-227.......KVWKKFRDDMDFV.DGDSVIFMRRRD.D-DDDDGELYVGVRRQR---------------------------
REM16_ARATH/25-116.......FGWDKFVKDHSLE.ENDLLVFK..FH.G-V.SEF..EVLVFDGQ---------------------------
ARFT_ORYSJ/120-233DLGVNDNDGWRGFVKAKRLA.TRDTVVFMRRGGGD-GDGDGELLVGVRRAP---------------------------
REM17_ARATH/268-362.......KGWTSFCQVNRIK.AGDSFKFK..LV.G-..TWKKPVLSLCPTQ---------------------------
Y1235_ORYSJ/21-121.......SGWPKFVQDQALR.ELEFVVFR..YD.G-N.TRF..TAMVFDRT---------------------------
REM4_ARATH/307-403.......RGCQDFFVANGVKNVGDPFTLE..VI.R-G..GPSPILKICSKV---------------------------
REM6_ARATH/391-491.......SGLREFCNAIGVK.AYESVVLE..LV.W-EETTTLPMFKFCSKI---------------------------
ARFM_ARATH/124-228S.....GGGWSVFATTKRLI.VGDIFVLL......-RGENGELRFGIRRAK---------------------------
Y2531_ARATH/19-114.......SGWEKFVSDNALG.ASEFLTFT..HK.G-N.MRF..TVNIFMQD---------------------------
REM6_ARATH/285-378.......GGWRSFCRENGLK.PGDSVTFK..LE.S-..SNTKTPLLLFSIA---------------------------
REM14_ARATH/387-485.......GGWKGFIQANGVK.ANESIMLE..LI.W-E.EETSCVLKFCSKV---------------------------
REM6_ARATH/132-227.......GGWKSLCTESKLE.VGDSCTFK..LL.H-..NAKMPVFRLCSKL---------------------------
ARFC_ARATH/159-261.......TGWSAFVNKKKLV.SGDAVLFL......-RGDDGKLRLGVRRAS---------------------------
ARFV_ORYSJ/128-230.......TGWSTFVNQKKLV.AGDSIVFL......-RTRHGELCVGIRRAK---------------------------
REM9_ARATH/149-244.......GGWTTFCTENKLD.VGDSCTFK..LL.Q-..KAKTPVFQLCSRT---------------------------
REM5_ARATH/152-247.......GGWTSLCTANKLE.VGDSCTFK..LL.R-..NPKIPVFRLCSRP---------------------------
Y3204_ORYSJ/416-516.......TGWRHFVHDNHLQ.IEDICLFQ..LM.N-DESKLTMTVHIIRRN---------------------------
B9H4U4_POPTR/147-248.......TGWSLFVGSKRLK.AGDSVLFI.....R-D.EKSQLMVGVRRA.---------------------------
M4D481_BRARP/318-418.......EGWREMCEANGVE.VNDSFVLE..LI.F-..EDANPIFKLHSK.---------------------------
VIV_ORYSJ/538-633........NTGDFVRSNELQ.EGDFIVIY.....S-DIKSGKYLIR.....---------------------------

PF09217

C5BFF1_EDWI9/15-166-------GG.SPLQDTEN---TGALALLVFDSSLGGKSDCQSVDVWVCRDADEEDIVEASIGE..ILPGDLIFGLADE
J9ZE30_LEPFM/15-163-------GRSSPFLDPEN---TGALMLLVVPPGDN..TQTSICRAWVCRNPSEEDLLEDLIGP..VEPGKGFLW....
H2ISN5_RAHAC/12-163-------GKKSPIQDPEN---TGSLLILAFKKQTE.LADCMYLEAWICRSIEEEDLLETITGE..ILPGISV......
A5FU96_ACICJ/14-166-------GGRSALLDPDS---TGALAVFAFLPHGP..GRQMECHVWVCDQGAEADLLEERIGP..VEPKAPVVWQPGE
Q9JZ51_NEIMB/26-167-------KNFEFLSD.KY---SGSLLVLCRACYKD.....LLFHAFVL..SSDEDI.EIFIAETNILPGSLYLPKKQE
A8AM36_CITK8/13-166-------GGKNPLQDPEN---TGALALLAFDHHQG..SDSQFVDIWVCHNAEEEDIVESSLGE..IVPGSLVYGPANE
A8G987_SERP5/12-169-------GQKSPVQNQNN---TGAIAIFAFYTPEN.LKDCGLVEAWVCCTVEEEDLLEAIIGE..VLPGTARSGPSAQ

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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