Sequence alignment for CL0421

PF06474

Q88FF2_PSEPK/1-34----------------MSSR.....SRRTSHSVALTRLAQISALALAATLVGCQS-------
Q87YS7_PSESM/1-34----------------MSSS.....ISKPSHSDALTRLAQAMAVTASALLAGCQS-------
Q9I2T2_PSEAE/1-34----------------MPPQ.....TRKTPDLDALARAVRVSILLIAGALAGCQG-------
G3XDB7_PSESM/1-34----------------MPAV.....AFPVSSPRLLARAVQIAVLAMGALCVGCQS-------
Q7MII3_VIBVY/1-39----------------MSPDQGGKYYQQPKVKQAGTMRFKFSWVFALLLLSGCQS-------

PF13627

Q88B07_PSESM/8-30---------------------------------------LAALVAVACLVSACGQKGPLYLP
C5BBD3_EDWI9/7-29---------------------------------------SALLVLCAATLGGCGLKGPLYFP
C6XB66_METGS/4-26---------------------------------------VLLGLLFTISLAACGTKGPLYIP
B7VMD6_VIBTL/46-68---------------------------------------TALFMVSVIGLSGCGQTGPLYDP
B6JDI9_OLICO/15-37---------------------------------------AVGLIVSAFALGGCGRKGPLDLP
F4GX05_PUSST/16-38---------------------------------------LLAGLLMAAMLTACGYKGPLYMP
Q7P222_CHRVO/15-37---------------------------------------LLACASLTLFLAACGYKGPLVLP
F8GHC7_NITSI/4-26---------------------------------------LTVILLSAYLLSACGLKGPLYLP
Q87KJ2_VIBPA/6-28---------------------------------------TVLFVMAAAMLAGCGQSGSLYIP
A7HTI7_PARL1/9-31---------------------------------------AVLGLVLLTALSACGRKGPLELP
Q2VYN1_MAGSA/4-26---------------------------------------TILILALVLGVAACGRKGMPDRP
Q89UN4_BRADU/14-36---------------------------------------IIVLSLTALALAGCGRKGPLDLP
A4Z1S3_BRASO/14-36---------------------------------------LLVLGASALLLAACGRKGPLDLP
F5ZFE0_ALTNA/18-40---------------------------------------WVLVTFTAILLSGCGYKGALYIP
LPPL_PSEAE/9-30---------------------------------------.VALALLAGSIAACGQKGPLYLP
S6BQB3_PSERE/8-30---------------------------------------FVALLAVACLLAGCGQKGPLYMP
L0DTU2_THIND/12-34---------------------------------------VVVLLGTLQILASCGQKGDLYFP
B2JI27_PARP8/15-37---------------------------------------AILAIVAGVALSGCGQRGSLYMP
D5C3F1_NITHN/13-34---------------------------------------.TVLLFLGVLVTGCGQKGPLYLP
D3VHZ6_XENNA/16-38---------------------------------------WSLAIITLLSLAGCGLKGPLYFP
D9SI10_GALCS/7-29---------------------------------------LVIMLAISLSLQGCGRKGPLIMP
R7KPT0_9BURK/7-29---------------------------------------ILAILAAAVLLTACGIKGDLYLP
G4QFB9_GLANF/4-26---------------------------------------LALCIALALFLCACGQRGPLYLP
A4G9Q0_HERAR/11-32---------------------------------------.LAGALCISLLAGCGQKGPLYMP
Q3SUR1_NITWN/23-45---------------------------------------LFLLTAAALALAGCGRKGGLDVP
I1XGH4_METNJ/10-32---------------------------------------LAFVLCTTSILASCGLKGDLYLP
D3RV76_ALLVD/12-34---------------------------------------IVVLLGTLAMLGACGQKGDLYLP
F4HBR0_GALAU/6-27---------------------------------------LTLILGS.LFLTACGVKGPLYMP
R7BZS1_9BURK/4-25---------------------------------------TIVAIVCLATLTACGLKGPLYL.
Q65QS0_MANSM/17-39---------------------------------------LLILTALCASVTACGVKGPLYFP
X2H6Z2_9GAMM/7-29---------------------------------------LLSILLVTLTLLGCGLRGPLYMP
A6VKS2_ACTSZ/4-26---------------------------------------LFTLSIICALLTGCGVKGPLYLP
D5V851_MORCB/7-29---------------------------------------LFGLSLMISLLSACGQKGSLYLP
I1YKC2_METFJ/10-32---------------------------------------LALILCTVSLLTACGQKGDLYLP
C6WTN7_METML/6-28---------------------------------------IIFLLISSSVLSACGTKGPLYIP
B2UEH8_RALPJ/11-32---------------------------------------.VGLTLTVAGLSGCGIRGPLYMP
Q8P547_XANCP/11-33---------------------------------------LALVGATLVLLAACGNKGPLVMP
B0UCT9_METS4/6-28---------------------------------------LLLVIGTVALLGACGRRGPLEAP
A8I034_AZOC5/10-32---------------------------------------LLLVLACAGTLAGCGVKGPLEPP
F0LQZ2_VIBFN/6-28---------------------------------------TALFLLSVLTLAGCGQTGPLYMP
H5WJ62_9BURK/30-52---------------------------------------LALAIAGLLAVAGCGQKGPLTLP
B8GSV9_THISH/13-35---------------------------------------VVVALGSLSLLASCGQKGDLYLP
Q5NEM4_FRATT/8-29---------------------------------------.ISITTALLVLSACGQTGPLYLP
Q3IEW1_PSEHT/12-34---------------------------------------LLISTVLLSALAGCGQSGPLYLP
I1EVA4_AMPQE/186-207---------------------------------------.AIVLISALLAAGCGQKGPLYLP
A6TGJ1_KLEP7/7-29---------------------------------------TLAVLFAIFSLTGCGLKGPLYFP
I3YBG2_THIV6/12-34---------------------------------------VVVALGILSMLGACGQKGPLYLP
Q21P76_SACD2/38-60---------------------------------------VLVIAVSTLAISACGQKGPLKLP
B3PEJ0_CELJU/27-49---------------------------------------LILLLSLCALLLACGQKGPLYLP
Q6N0M0_RHOPA/22-44---------------------------------------LLMIVAATLALSGCGRKSGLDLP
G0AGF2_COLFT/13-35---------------------------------------IVAAVAATLGLAACGQKGPLFMP
U5NE17_9BURK/20-42---------------------------------------ACSLVLATTLLTACGQTGPLYLP
Q5P5N5_AROAE/38-60---------------------------------------IAAVLGSTLFLSGCGIKGPLYLP
B0UWH9_HISS2/7-28---------------------------------------ILLLSAIAFGVSGCGVKGSLYF.
F9ZTJ1_ACICS/10-32---------------------------------------FLLVSSLLLGLAGCGRKTPLQLP
I0HMC0_RUBGI/6-28---------------------------------------ALVAALALTLTAGCGQKGPLKLP
D4GGN0_PANAM/7-29---------------------------------------LLAMTMALTSLAGCGLKGPLYFP
D7A9C2_STAND/16-37---------------------------------------.SLILGGALALGGCGVKGPLEPP
A5WCB1_PSYWF/51-72---------------------------------------.MVMMLGTLMLTGCGQKGALYLP
W0L9P5_9GAMM/9-31---------------------------------------YALMAVLLAGLSGCGLKGPLYFP
K0HNP9_9BURK/11-33---------------------------------------TLVLAASAAALFGCGQRGPLYLP
D0IZG1_COMT2/14-36---------------------------------------LAACAASLAALSACGQKGPLYLP
Q83AD3_COXBU/16-38---------------------------------------LLLIISLAFFIGGCGSKGALYLP
Q92MH0_RHIME/12-34---------------------------------------ALLLAIPGLVLAGCGRKGDLDRP
K0C6I3_CYCSP/7-29---------------------------------------MMLICGLLAMLAACGQKGPLYMP
Q1QSV3_CHRSD/7-29---------------------------------------LAALGMAMLTLAGCGQKGPLYMP
A6WXL5_OCHA4/10-32---------------------------------------VLLIAALAATLAACGRKGPLEPP
R5EK49_9BURK/5-27---------------------------------------SLILFFPCLLLTGCGIKGPLYLP
F8J4W6_HYPSM/14-36---------------------------------------MVLLGAVAAGFAGCGVKGPLEPP
C4K4D8_HAMD5/5-26---------------------------------------.LFILSITLIITSCGLKGPLYFP
Q6CZG7_PECAS/14-35---------------------------------------.FFLVLSVVSLLGCGLKGPLYMP
Q5QUS4_IDILO/9-30---------------------------------------TLVLSAILMTLVGCGQKGPLT.P
Q13TK8_BURXL/18-40---------------------------------------AVLAILAGCALAGCGQRGSLYLP
Q7MQC3_VIBVY/39-61---------------------------------------TVLLTLSVALLAGCGQSGALYIP
Q11DW4_CHESB/8-30---------------------------------------TLLVLGLAVGLSACGRKGPLDTP
J3YSQ2_9ENTR/7-29---------------------------------------LIGFGLILFGISGCGLKGPLYFP
C1D9B9_LARHH/4-26---------------------------------------RLLALFLTALVAGCGFKGDLYLP
A1KBR3_AZOSB/7-28---------------------------------------.AAALAGVLLLTGCGIKGPLYHP
A1W3Y6_ACISJ/11-33---------------------------------------TIVLAVSTAAFAACGQRGPLYLP
F6AGN7_PSEF1/8-30---------------------------------------LIALVAVTTLLGGCGQKGPLYLP
F2K0T0_MARM1/5-27---------------------------------------WLFAFVFITLLSACGNKGALYLP
Q0AC72_ALKEH/9-31---------------------------------------LVLLVLSTTLLAGCGQKGPLYMP
A1TKV3_ACIAC/12-34---------------------------------------SVLAAGTVAALTGCGQRGPLYLP
Q6F948_ACIAD/7-29---------------------------------------YVSLFATSLSLLGCGQTGALHLP
Q74GT8_GEOSL/11-33---------------------------------------LVAGIALAAALAGCGRKGPLVPP
E1SQC1_FERBD/4-26---------------------------------------LTLALLLLLGLAACGQKGPLYLP
W0DZC0_MARPU/12-34---------------------------------------IILVLGTVSMLGACGQKGPLYLP
A7MQK3_CROS8/7-29---------------------------------------SLAVMLTLFSLTGCGLKGPLYFP
I2BE62_SHIBC/7-29---------------------------------------TLAVVLVLFNLSGCGLKGPLYFP

PF08139

BAMC_YERPE/1-27M............................AISLQKSTVVKVVGVSLVMLLAACST-------
A1S8P9_SHEAM/1-37MANKSGI................LMRLLSRFGSKMKKSLAVLTAILT..LSGCAG-------
Q12R62_SHEDO/1-42MVKTGKMVN...........FWYSDATIFDSVELMKSITSLFIALFL..LSGCAS-------
Q65VU1_MANSM/1-26M.............................IMKLSNKFSLAALTVASVLLAACQA-------
Q7N956_PHOLL/1-35MQKRKN..................RRGIIYPLLLVRQGLMTLGFVFA..LSACTN-------
A1STV5_PSYIN/1-26M.............................IHTWSKKIRFFTLVSAAFFLFSCSN-------
A6TGQ8_KLEP7/1-35MAVNSF.................IEGAIKPLLSVWRRPLALAGILL...LTACSH-------
Y162_HAEIN/1-27M............................ALVNKIKTLSSVGILAATLFLAGCQA-------
Q6DAL4_PECAS/1-35MPVKSL..................SRGAFSPLLLLRRLCGAGLVLIA..VVACSS-------
Q32AH4_SHIDS/1-33MNSFN...................EGVVSPLLSFWRRSLMLAGALF...LTACSH-------
Q32JI9_SHIDS/2-54MNLHALPTSPRRWQCYDGGNFYQTRLRVSESPNMFKKILFPLVALFM..LAGCAK-------
Q7CKT3_YERPE/12-35.............................KPLLFMQRVLITFGLTLG..LSACSS-------
Q9KV82_VIBCH/1-35MLYTTP..................RLNISAFLFMKQQLSFLFLLSGL..LAGCSS-------
Q9L9I1_SALTY/1-33MNSFI...................EGAHQPLLSVWRRAFLFSGALL...LTACSH-------

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
Close window