Sequence alignment for CL0461

PF12749

A0SJS4_TETPY/1-96-MDT-QTQTKL-TTACKCNPCKCQPLCKCGTTSACNCQPCENCDPCSCNPCKCGTSDACKCNPCKCTDCKCAASAGCKCS
Q697L8_MYTGA/1-72-MAG-PCNCIA-TNVCICGTGCSEKCCQCG..DACKCE.....SGCGCSGCKV......................VCRCS
ZYM1_SCHPO/1-50-MEH-TTQ...-..............CKSKQGKPCDCQ.....SKCGCQDCKE......................SCGCK
Y7870_DICDI/1-51-M..-......-THSCKCGDS.....CQCG..DKCTCGPKET.PKCGCSDCKC......................GDKCS

PF00131

MT3_BOVIN/1-68-MDPETCPCPT.GGSCTCSDPCKCEGCTCASSKKSCCS-------CCPAEC..----------------------.EKCA
MT4_CANFA/1-62-MDPGECTCMS.GGICICGDNCKCTTCNCKTCRKSCCP-------CCPPGC..----------------------.AKCA
MT2C_RABIT/1-62-MDP.NCSCATAGDSCTCANSCTCKACKCTSCKKSCCS-------CCPPGC..----------------------.AKCA
F6PZ48_MACMU/1-61-MDP.NCSCAT.DVSCACAGSCKCKECKCTSCKKSCCF-------CCPVGC..----------------------.AKCA
Q9NG19_CRAGI/2-66-SDP..CNCTE.TGTCVCSDSCPATGCKCGPGCKCGDG-------CKCSGCKV----------------------KCNCS
U3JYH7_FICAL/2-63-.DSQDCPCAT.GGTCTCGDNCKCKNCKCTSCKKGCCS-------CCPAGC..----------------------.AKCA
W5K846_ASTMX/1-60-MDP..CDCAK.TGSCNCGASCKCTNCQCTTCQKSCCP-------CCPSGC..----------------------.SKCA

PF11403

MTCU1_YEAST/9-47-QNE--------GHECQ---------CQCGSCKNN-----------------------------------------EQCQ
J4U064_SACK1/9-47-QNE--------GHECQ---------CQCGSCKNN-----------------------------------------KQCQ

PF05522

MTA_STRPU/2-64-PDV-KCVCCKEGKECACFGQDCCKTGECCKDG..TCCG.....ICTNAAC--------------------------KCA
MTB_SPHGR/3-67-PDV-KCVCCQDGEECPCKGGECCITGTCCKEGDGLCCG.....KCSNAAC--------------------------KCA
MT_LYTPI/4-68-PDV-KCFCCRDGKECACGGGECCITGKCCKEGDRTCCG.....KCSNAAC--------------------------KCA
O76953_9ANNE/3-73-CCG-FDACPRRGAACAC.TNCRCLKSECSPNYRKLCCADS.QGKCGNAGC--------------------------KCG
MT_EISFO/4-75-CCG-KSTCAREGSTCCC.TNCRCLKSECLPGCKKLCCADAEKGKCGNAGC--------------------------KCG
Q9GRJ0_LUMRU/9-77-CCG-NKTCPREGSTCAC.SKCRCPKDDCLPNCKKLCCADA...QCGNAGC--------------------------SCG
Q966Z5_PARLI/2-66-PDT-KCVCCQDGKQCPCAGQECCITGKCCKDGASVCCG.....TCSNAAC--------------------------KCT

PF02069

K9U5A2_9CYAN/12-63TVTSMKCACDN----CLC---VVSLEDAIQKDGKAYCS--------------------------------------EACA
Q8DK53_THEEB/3-54TVTQMKCACPH----CLC---IVSLNDAIMVNGKPYCS--------------------------------------EVCA
K9RIA9_9CYAN/3-53AVDLMKCACDK----CLC---IVKVETAIDRDGKHYCS--------------------------------------EACA
K9S806_9CYAN/3-53TVTQMKCACES----CLC---VVNLSDAVHKDEKYYCC--------------------------------------EACA
K9Z103_CYAAP/5-55TVTQMKCACPS----CLC---IIDISQAISRDGHYYCS--------------------------------------TACA
S6AIY4_PSERE/2-49..TEQRCACAS----CSC---VVD.ARALVRDGKAYCC--------------------------------------AACA
K9PAC9_CYAGP/10-58...TLQCACPG----CHC---TVQEDSPFRNGALLFCS--------------------------------------EVCA
K9PV70_9CYAN/3-53TATQLKCDCPN----CTC---MVDLASAVKKDGKNYCS--------------------------------------TTCA
K8GTB8_9CYAN/3-53TVTQMKCACPD----CLC---IVNLSDAVMKDGKAYCG--------------------------------------EACA
F2K9R9_PSEBN/2-50..SKLKCGCPD----CQC---EVDPQRMFNHDGEAYCS--------------------------------------QACA
B0UBD7_METS4/7-56.VEMVKCACED----CVC---VVPLAKAVQHDGRAYCC--------------------------------------DECA
B7KK77_CYAP7/3-53TVTQMKCACES----CLC---IVDLETAIKKDGKSYCS--------------------------------------EACA
Q3J765_NITOC/6-52QSSTMKCAHAP----CSC---VVTAEEGVKKDGQVYCS--------------------------------------EACA
B7JYR9_CYAP8/5-55TVTQMKCACSS----CVC---IVDLSDAIQKDGKYYCS--------------------------------------DACA
A0ZMC0_NODSP/3-53TVTQMKCACPT----CLC---IVSLEDAINKEGKYYCS--------------------------------------EGCA
MT_SYNE7/3-54STTLVKCACEP----CLC---NVDPSKAIDRNGLYYCS--------------------------------------EACA
K9VK01_9CYAN/3-53TATQTKCACPS----CSC---VVNVSEAIEKDGKQYCS--------------------------------------SACA
D4ZYS3_ARTPN/3-53TVTQMKCACES----CLC---IVDTTKAIAKNGQYYCS--------------------------------------EACA
K9YQD6_CYASC/3-53TVTQMKCACPS----CLC---IVNLSDAIQKNDHYYCC--------------------------------------QACA
K9THX7_9CYAN/3-53TVTQMKCACES----CLC---VVPTDKAVMKDGKPYCS--------------------------------------DACA
Q7NFU4_GLOVI/3-53TVTQMKCACEA----CLC---VVTLSEALEKDGKYFCS--------------------------------------GPCA
Q88HU1_PSEPK/2-49..NDQRCACTH----CSC---TVD.ANALQRDGKAYCC--------------------------------------EACA
K9XVF5_STAC7/3-53TVTSMKCACDR----CLC---VVSLEDAVKKDGKYYCC--------------------------------------EACA
K9SJ94_9CYAN/24-77SATLVKCACSK----CLC---VIDPSDAIEANGKYYCC--------------------------------------KACA
K9V6M1_9CYAN/3-53SVTLMKCACQT----CLC---VVSTQDAVQKDNKYYCS--------------------------------------PACA
B1LW41_METRJ/6-55.VEMVKCACQD----CVC---VIPVAKAVSRDGKAYCC--------------------------------------DDCA
C5AVV7_METEA/6-55.VDMVKCACPD----CVC---VVSVTKAVKRDEKAFCC--------------------------------------DECA
K9VWZ1_9CYAN/3-53TVTSMKCACDS----CLC---VVNIGEAIEKDEKYYCS--------------------------------------QPCA
K9T9H0_9CYAN/20-70TVTSMKCACES----CLC---IVSLENALQKNGKYYCC--------------------------------------EACA
Q7U999_SYNPX/2-52.STAIKCACPK----CTC---MVAEESAIVLQGKFFCS--------------------------------------TSCS

PF12809

COLL1_HUMAN/39-118--CIRNQDCETGCCQRAPDNCESHCAEKGSEGSLCQTQVFFGQYRA------------------------------CPCL
A0A023ZGY2_YEASX/2-69--TVKICDCEGECCKDSC.HCGSTCLPSCSGGEKCKCDHSTGSPQC------------------------------KSCG

PF12749

A0SJS4_TETPY/1-96PCNCT---------DC---KCTGTESC.CQK....Q
Q697L8_MYTGA/1-72GTCAC---------GC---GCTGPTNCKCESGCSCN
ZYM1_SCHPO/1-50SSAVD---------NC---KCS...SCKCAS....K
Y7870_DICDI/1-51S....---------DC---KCT...SCTCK.....K

PF00131

MT3_BOVIN/1-68KDCVC---------KGGEGAEAEEKKCSCCQ-----
MT4_CANFA/1-62QGCIC---------KG......GSDKCSCCA-----
MT2C_RABIT/1-62QGCIC---------KG....ASD..KCSCCA-----
F6PZ48_MACMU/1-61QGCVC---------KE......ASEKCSCCA-----
Q9NG19_CRAGI/2-66GSCGC---------GK...GCTGPENCKCA.-----
U3JYH7_FICAL/2-63QGCVC---------KG...PPSA..KCSCCK-----
W5K846_ASTMX/1-60SGCVC---------KG...NA...CGSSCCQ-----

PF11403

MTCU1_YEAST/9-47KSCSC---------PT---GCNSDDKCPCG------
J4U064_SACK1/9-47KSCRC---------PI---GCNSDDKCPCG------

PF05522

MTA_STRPU/2-64NGCKC---------GSG...CSCTEGNCAC------
MTB_SPHGR/3-67DGCKC---------GSG...CSCTLGNCTC------
MT_LYTPI/4-68DGCKC---------EGA...CACTMGNCTC------
O76953_9ANNE/3-73AACKC---------AAGACASGCKKGCCGD------
MT_EISFO/4-75AACKC---------SAGSCAAGCKKGCCGD------
Q9GRJ0_LUMRU/9-77AACKC---------AAGSCASGCKKGCCAD------
Q966Z5_PARLI/2-66GGCKC---------EGG...CQCTEGNCTC------

PF02069

K9U5A2_9CYAN/12-63SGHPD---------GS..SGC.GHTGCGC-------
Q8DK53_THEEB/3-54NGTCK---------EN..SGC.GHAGCGC-------
K9RIA9_9CYAN/3-53EGHKT---------I...TGC.GHSGCGC-------
K9S806_9CYAN/3-53NGHQS---------G...DGC.GHSGCGC-------
K9Z103_CYAAP/5-55EGHKE---------G...EGC.GHSGCGC-------
S6AIY4_PSERE/2-49DGHKD---------G...EPC.HETGCHC-------
K9PAC9_CYAGP/10-58KGHPN---------G...EPCHASCGCEC-------
K9PV70_9CYAN/3-53NGHPE---------G...GCC.AESSCSC-------
K8GTB8_9CYAN/3-53NGHPE---------G...AGC.GHTGCGC-------
F2K9R9_PSEBN/2-50EQHPN---------G...EPC.PAPDCHC-------
B0UBD7_METS4/7-56TGHPD---------H...AGC.GHAGCTC-------
B7KK77_CYAP7/3-53NGHPE---------G...SGC.GHQGCGC-------
Q3J765_NITOC/6-52RE...---------....QGC.EHGACAC-------
B7JYR9_CYAP8/5-55NGHPD---------G...AGC.SHHGCEC-------
A0ZMC0_NODSP/3-53EGHKT---------I...KGC.GHNGCGC-------
MT_SYNE7/3-54DGHTG---------GS..KGC.GHTGCNC-------
K9VK01_9CYAN/3-53DGHPN---------G...QGC.GHTGCEC-------
D4ZYS3_ARTPN/3-53NGHPN---------G...DGC.GHKGCNC-------
K9YQD6_CYASC/3-53DGHPN---------G...SGC.GHTGCGC-------
K9THX7_9CYAN/3-53NGHVD---------G...TGC.GHSGCDC-------
Q7NFU4_GLOVI/3-53NGHPD---------G...SGC.GHTGCEC-------
Q88HU1_PSEPK/2-49SGHRK---------G...EPC.RMQDCHC-------
K9XVF5_STAC7/3-53NGHTD---------G...SGC.GHQGCGC-------
K9SJ94_9CYAN/24-77SGHVD---------GTNDSHC.SDVGCEC-------
K9V6M1_9CYAN/3-53EGHKT---------M...KGC.ANSGCGC-------
B1LW41_METRJ/6-55DGHKD---------H...AGC.EHAGCAC-------
C5AVV7_METEA/6-55EGHPD---------H...AGC.DHAGCSC-------
K9VWZ1_9CYAN/3-53NGHAD---------G...EGC.GHSGCGC-------
K9T9H0_9CYAN/20-70DGHVN---------E...KGC.GHTGCTC-------
Q7U999_SYNPX/2-52TGHAN---------N...EPCHGEGSCGC-------

PF12809

COLL1_HUMAN/39-118RNLTCIYSKNEKWLSIAYGRCQKIGRQKLAKK----
A0A023ZGY2_YEASX/2-69EKCKC........ETTC..TCEK.SKCNCEKC----

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
Close window