Sequence alignment for CL0462

PF08920

SF3B1_SCHPO/224-351NTEISQKPK--------RSRWD...QAP..........PSVTQV..............STTKRRSRW..DK...AP..EN
A2QD06_ASPNC/214-359SVATDTKAK--------RSRWD...QTPA.....PAVPGAAAE...............EAPKRRSRW..DQ...AP..AI
A6R4S3_AJECN/239-380DKQAEAKPK--------KSRWD...QTPV.....PSAPE...................EAPKRRSRW..DQ...AP..SL
Q7RM47_PLAYO/216-370NIKNKKK.K--------ISRWD...RTVENSTSSNNNNNFGDGKMA.........SSGMNQLKTPII..SGNKYNE..NM
A7AR82_BABBO/141-292RKLDKKRSR--------RSGFDDDSDIPATPQFPDTPQFAETPDAQ.........TLSEPRKRASRW..DK...TP..QM
A5KBA4_PLAVS/260-444GGAVKRK.K--------ISRWD...KVGEGT.TASAADGLAQSDLMKTPRVVAAGGVALGGMAAGGM..AAGGATP..GG
A0EEP7_PARTE/146-320DGPQSSA.R--------ASRWD...NTNKLQ.ATPGRAGTVFGE..............TPTPGHMEI..GD...TP..YK
Q86JC5_DICDI/46-202ETPK....R--------RSRWD...ETPININSGGLSGGVT.................PNYNAMSNG.............
Q7ZYA4_XENLA/330-459PTPGASK.R--------KSRWD...ETP......ASQMGGSTPV.............................LTP....
Q9FMF9_ARATH/282-420ATPTPKR.Q--------RSRWD...ETP.......ATMGSATPM..............G..GVTPGA..AY...TP....
Q7SDG6_NEUCR/235-368PAPEPK..K--------RSRWD...QAPS.....VPAPGAPG................AEPKKRSRW..DQ...AP....
Q4YZD5_PLABA/213-360NIKNKKK.K--------MSRWD...KTVE....NSSNNNIGDSKII.........NSDINNLKTPII..SGNKYNE..NM
O77327_PLAF7/280-462VNNNKKK.K--------NSRWD...KIS......KEQEDVKRVKLNKENNDNMSTPYISNNMSTPYI..SNNMNTPYISN
A7S041_NEMVE/348-477PTPGSK..R--------RSRWD...ETP......ASQMGGTTPM.................................IGT
Q5CWK2_CRYPI/31-168TRPQR...R--------KKRWD...IVP......DEDQEVSSCG..............KLDQKKSRW..DN.........
Q4XWD8_PLACH/64-226NIKNKKK.K--------LSRWD...KTGDG...GGNNINFADNGTI.........NSDMNNMKTPIV..SGNRYNE..NM
Q0UV17_PHANO/224-356EAPEPTK.K--------RSRWS...PAPV.....SPAPEQKAPE..............AAAPARSRW..DTAAVAP....
A0EE73_PARTE/146-326DGPQSSA.R--------ASRWD...NTNKLQ.ATPGRAGTVFGE..............TPTPGHMEI..GD...TP..YK
Q17F20_AEDAE/330-478TTPASK..R--------RSRWD...ETP.....SNATPSAMTPS..............IAMTPTPHATPGH..ATPLLTP
A7ECQ4_SCLS1/227-361PPSTEGKTK--------RSRWD...QTPA.......VGGVSVD...............ETPKRRSRW..DQ...AP....
Q5KBW5_CRYNJ/167-288KEEEPKK.R--------RSRWD...QTPAE...A........................PPEKKRSRW..DQ...TP....
Q4P3S2_USTMA/236-373SSEQAPRKR--------RSRWD...EAPVEA.NDTASILTPEAA..............NPIAKRSRW..DQ...AP....
A4RTQ4_OSTLU/92-243VKPTPRR.S--------RSRWD...ETP.......MIRAGGDPS..................ATPAWTGGE...TPVIAA
Q4UCL9_THEAN/93-247TRRSKRRSQ--------RDRWD...STPDAG.EAQTPAFDSTPMDSTPF...DGTFEMLEKKKVSRW..DK...TP..MM
Q6AHU1_PNECA/195-343QDTSVTK.K--------RSRWD...QTPA.....PVALGSVTD...............APTPKQSRW..DQ...TP...I

PF12815

SPT5_CRYNJ/853-1001GGKTPSAAN.........ASGG---KTPAW..GASGGKTPAYGMA..............SGGKTPAY-------GM...Q
A2DFD4_TRIVA/628-775EEETPAVEE.........KKKE---ETPAV..EEKKEETPAVEEK...............KEETPVE-------EK...K
A7EGY2_SCLS1/880-1026GGRTPAWKSG.......ATDGG---RTPGW..ANDGSRTVYA.NDGSRT.......AYGGGNRTPAW-------SS....
A7RY25_NEMVE/136-220DSQTPHYCD..........LDS---QTPHY..WDLDSQTPHYCDL...............DSQTPHY-------CD...L
A7SQI6_NEMVE/27-111SDLTPIYYQ..........QSD---LTPLY..YQQSDLTPLYYQQ...............SDLTPLY-------YQ...Q
A7SVM3_NEMVE/131-300IYRTPAFHT...........IY---RTPAF...HTIYCTPAFHT................IYRTPAF-------HT....
A8P9L8_BRUMA/828-921GGKTPMY.............GA---QTPMY.....GSQTPMHE.................GGRTPHY-------......
A8Q761_MALGO/803-917GGKTPAYNP.........YDGS---RTPAY..GVGMGQTPNPYG................SARTPAY-------PG....
A8X0M4_CAEBR/815-905GSKTPMY.............GA---QTPMY.....GAMTPHA..................GDRTPHY-------......
B2ALM9_PODAN/800-954SSRTPAWSS........NASGA---RTPAW...QDGSRTANP.YDGNRTAYGGATAYGGSGGRTPAW-------NS....
B2WAZ3_PYRTR/833-971GGRTPGWGGA......GAAAGG---RTPGW..GGDGGRTAYGGGDGSRTA.....YGGGDGSRT.AY-------GGATAY
B3MGG2_DROAN/814-927GAQTPSYTA..........AGS---KTPLV.....GSQTPNWDT................DTRTPY.-------......
B5VPB8_YEAS6/256-376GGKTPAVNAHGGSGGGGVSSWG---GASTW.GGQGNGGASAWGGAGGGAS....AWGGQGTGATSTW-------GGASAW
B6H820_PENCW/830-964SARTPAWGG.........LSGS---RTPAW..KNDGSRTANP.YEGNRT......AYGGVGSRTPSW-------TS....
B6JZQ2_SCHJY/824-951GSKTPAWNSGGS..NAWSTDSS---RTPAW..NADSSKTPAWNAD...............SSKTPTW-------GN...D
B6TCM6_MAIZE/32-159TSSTPAFGT...........LS---STPAF...GTPSSTPTFGT................PSSTPAF-------GT....
B7PNC8_IXOSC/678-804GSQTPMYSS...........GS---RTPMY.....GSQTPLYEA................GSRTPHF-------G.....
B8MHU8_TALSN/831-972SSRTPAWGGS.......AASGS---RTPAW..KADGSRT......AYG........GAMGGGRTPAW-------NS....
B8N9H1_ASPFN/700-841SARTPAWAG.........MGGS---RTPAW..KNDGSRTSNP.YDGSRT......AYGGFGSRTPAW-------NA....
C1GYN5_PARBA/875-1030SSRTPAWNAA.......AASSS---RTPAW..KADGSRTSNP.YDGNRTAY...GGGAFSGSRTPAW-------TA....
C5DLW2_LACTC/930-1055GGKTPAVNSGGQ...GGASAWG---GASTW.GGQGG..ASTWGGAGQGGGA..SAWGGQGAGATSTW-------GGASAW
C5FGI7_ARTOC/857-1010SSRTPAWNA.........GTGS---RTPAW..KAEGARTANP.YDGNRT......SYGGFGGRTPAW-------TS....
SPT5H_HUMAN/772-870GSQTPMYGS...........GS---RTPMY.....GSQTPLQD.................GSRTPHY-------......
SPT5_SCHPO/869-990GSRTPAWNS...........GN---KTPAW...NVGNKTPAWNS................GAKTPAW-------NA....
Q2GQE5_CHAGB/784-915GSRTPMGAG..........GGE---RTPAW.....GAPKGEF.YL..................LPCV-------QGL..N
Q382Z6_TRYB2/41-149GGDTPKVVV...........NT---ELSAW....RGHATPTPSAYAMDPAK..TPTMRATGGATPVQ-------......
SPT5_GIBZE/851-991SGRTPAWKAQ.......DMSGA---RTPAW...ADGSRTVNP.YDGSRT.......AYGSGGRTPAW-------QA....
SPT5_EMENI/826-962SSRTPAWSG........AGLGS---RTPAW..KADGSRT......AY..........GGAGSRTPAW-------NA....
Q5EFD5_TRYCR/42-155GGDTPKVIV...........NA---ELSAW....RGHSTPTPSAYXXDSVK..TPTMRGQGGQTPTF-------GA....
SPT5_YARLI/814-957GSRTPAANA..........GGA---QTPAW..GAMGNKTPSWGAS...............ESRTPAW-------G.....
SPT5_ASHGO/810-932GGKTPAVGSHGA...GAASAWG---GASSW.GGQGGGATSTWGGQPGNVF.....TWGGQTGATSTW-------GGASTW
SPT5_NEUCR/861-1016RSRTPAWNR........DAGGS---RTPAW...NDGSRTVNP.YDGSRTPYGGATAYGGIGSRTPAW-------HS....
ENPP_APLCA/361-543GKRVPGYSH........SFVGK---RVPGYSHSFVGKRVPGYSHSFVGKRVP.GYSHSFVGKRVPGY-------SHS.FV

PF08920

SF3B1_SCHPO/224-351FTISEHV....IEN...................GISEDLINKE.............................--------
A2QD06_ASPNC/214-359AASTPVG....NQ....................GLATPMHPSQ...................VGVPMMPTSF--------
A6R4S3_AJECN/239-380VSATPVG....NE....................GLATPIHPSQ...................AAAPVAPLTF--------
Q7RM47_PLAYO/216-370IINTPIL....GT....................NIMTPITPYSGS................VQNNDYIKIKI--------
A7AR82_BABBO/141-292EAQTPSA....TPLGL..............GEYGMSTPFTPAG..................LQPEQYAFST.--------
A5KBA4_PLAVS/260-444LLKTPYLVPGSGNFVNTPYVV.....NQLGNAPAMFTPMMTPGVA...............SLATDSIIRMKI--------
A0EEP7_PARTE/146-320YGETPTP....NHGEKEHLW......LVNHGFGGGMTPHTPGTVMRTPMT.....PGQLGNMTPDRVYQFRL--------
Q86JC5_DICDI/46-202.GVTPIF....NNMM.................DGGVTPVYNSNNNNNSNSNGGSNNNKNILMQTPDPYQAQL--------
Q7ZYA4_XENLA/330-459.GKTPIG....TPA..................MNMATPTPGHIMS................MTPEQLQAWRW--------
Q9FMF9_ARATH/282-420.GVTPIG....GI....................DMATPTPGQLIFR.............GPMTPEQLNMQRW--------
Q7SDG6_NEUCR/235-368.SATPVG....NV....................GLATPMHPTQ.....................TAVVPPAF--------
Q4YZD5_PLABA/213-360IINTPIL....GT....................NVMTPITPYSGS................IQNNDYIKFKI--------
O77327_PLAF7/280-462NMNTPYI....SNNMNTPYISN..NMNTPYISNNMNTPYIPNNIKTPFTP......MVDTSLSTDDLIKIKI--------
A7S041_NEMVE/348-477SGVTPAG....ALA..................MQMHTPTPGQLVS................MTPEQMQAYRW--------
Q5CWK2_CRYPI/31-168.GEVETL....RE....................AKETVETNSS..................EQSSEVCSAQR--------
Q4XWD8_PLACH/64-226MINTPIV....GT....................NMMTPMTPYLGS................IQNNDYIKFKI--------
Q0UV17_PHANO/224-356...........S.....................GGATPAPTTNG.................SRPGNMPPVAF--------
A0EE73_PARTE/146-326YGETPTP....NRSYIKARWGERTPLAGQSGFGGGMTPHTPGTVNRTPMT.....PGQLGNMTPDRVYQFRL--------
Q17F20_AEDAE/330-478GGTTPIG....HKA..................MAMATPTPGHLAS................MTPEQLQAYRW--------
A7ECQ4_SCLS1/227-361.AATPMG....NQ....................GLVTPMHPSQ...................MGGPAIPTTF--------
Q5KBW5_CRYNJ/167-288.AQTASS....S.....................VLAAPTNLAK.........................PSGI--------
Q4P3S2_USTMA/236-373..IEEDG....SN....................GIGKVQSSSS.......................SISHAV--------
A4RTQ4_OSTLU/92-243GGETPKI....TA....................GMATPSAAQIAAHAAM.......QSNVPLTPEQYQQMRF--------
Q4UCL9_THEAN/93-247EQQTPMA....HTGM.................YGMATPMTPQI..................VVPESMLKFNI--------
Q6AHU1_PNECA/195-343IGITPIG....LQGIFFFIL......YIINFHIGLQTPLPNMI......................PQMPISF--------

PF12815

SPT5_CRYNJ/853-1001GGKTP------NAYA...........MAPPGPSGGRTPAYGAYGRPE.......ASGSRPSVMAPPSAPYSAPYSAP...
A2DFD4_TRIVA/628-775EEETP------A..................QEKKEETPATEEKKEEESPVAEEKKEEETPVAEEKKEEETPAVEEK....
A7EGY2_SCLS1/880-1026GAKTP------AYG..............LSDNFGSKTPAYGGSGSSGD.....AWGSKTPAYQPNNSNDNWNSGPSN...
A7RY25_NEMVE/136-220DSQTP------H.................YCDLDSQTPHYCDLD............SQTPHYCD................
A7SQI6_NEMVE/27-111SDLTP------L.................YYQQSDLTPIYYQQS............DLTPIYYQ................
A7SVM3_NEMVE/131-300IYRTP------A..................FHTIYRTPAFHTIYRTPAF....YTIYRTPAFHTIYRTPAFSLHTIYRTP
A8P9L8_BRUMA/828-921GALTP------S...................YDGGRTPVHSSAWDP..........STTPAHPI................
A8Q761_MALGO/803-917MAHTP------N...................PYGGRTPAYPGMAATPNPY.GGGLMGQTP....................
A8X0M4_CAEBR/815-905SAMTP------A...................YDGGRTPAYGDG.............GRTPAYGS................
B2ALM9_PODAN/800-954GSKTP------AH...............DGFGHGSKTPAYGGSGSGDT......WGSKTPAYGGGLSAPTPAASGGADW.
B2WAZ3_PYRTR/833-971GGATS------YGGGTAYGGNDGNRTSYGGFNSGGRTPGWGGGGG...........ASGTTTSK................
B3MGG2_DROAN/814-927GTMTP------S...................HDGSMTPRHGAWDPT.........ANTTPARNNEFDYS...........
B5VPB8_YEAS6/256-376GNKSS------W....................GGASTWASGGESN...........GAMSTWGGTG..............
B6H820_PENCW/830-964GSKTP------YDSSS..........GFDAFASGSRTPGWNAGANT.........GSRTPGW..NSMAAGRDQ.......
B6JZQ2_SCHJY/824-951SSKTP------A.................WGNDGGKTPAWGADG............GKTPSYGGFSAA............
B6TCM6_MAIZE/32-159ASTTP------A..................FGASSSTPAFGTT.............STTPPFGSLNFGTPSS........
B7PNC8_IXOSC/678-804GGQTP------V...................HDGSRTPVHGAWDPT.........TANTPARPEL...............
B8MHU8_TALSN/831-972GARTP------YSSGSGD.....SSGGFDAFAAGSRTPAWGTATG...........SRTPAWSANHTSSSAATS......
B8N9H1_ASPFN/700-841GARTP------YGGSGSG......QSDFDAFAAGSRTPAWNANSG...........SRTPAW..SGATASNGSK......
C1GYN5_PARBA/875-1030GTKTP------YDSSSGFGV..SSNSGFDAFAAGSRTPAYPGGTG...........SRTPAWGPGSAAPPPVGQS.....
C5DLW2_LACTC/930-1055GNKSS------W....................GGASTWASGGDNN...........GGVSTWGGD...............
C5FGI7_ARTOC/857-1010GTKTP------HDSGSGFSG.NSSNSGFDAFMAGSRTPGHPNAMSAN.......SGSRTPAWG.HSGSSSSHLNA.....
SPT5H_HUMAN/772-870GSQTP------L...................HDGSRTPAQSGAWDPN........NPNTPSRAE................
SPT5_SCHPO/869-990GNKTP------S..................WNNGTKTPAWNANQTPMVANGTNTSWGQTPAYGGFS..............
Q2GQE5_CHAGB/784-915ANYTP------AH...............DGFGHGSKTPAYGAGNNDP.......WGSKTPAY..GVSAPTPGASGADSW.
Q382Z6_TRYB2/41-149GGQTP------M....................FGGQTPVFG...............GQTPAFGS................
SPT5_GIBZE/851-991GGRTP------APG..............DAFGAGSRTPAYGGGDSWG.......SGSKTPAW..GVTAPTPGASGG....
SPT5_EMENI/826-962GARTP------YGGGFGSG...SGNSDFDAFAAGSRTPAWGAASG...........SRTPAW..SASANTTSRN......
Q5EFD5_TRYCR/42-155GGTTP------M.................LVGAGGTTPMLG...............GTTPMFGG................
SPT5_YARLI/814-957GAKTP------AW...............GAAGAGSKTPAFGV..............ARTPSWKSSSAGTYGGSSSRNKGW
SPT5_ASHGO/810-932GNKST------W....................GGASTWASGGEN............GAASTWGGG...............
SPT5_NEUCR/861-1016GSRTP------AP...............DSFGHGSKTPAWSAGSDSW........GSKTPGY..GASAPTPGASGDAWGY
ENPP_APLCA/361-543GKRTP------GY...............SHSFVGKRAPGYSHSFVG..........KRTPGYSHSFVGKRAPGYSHSFVG

PF08920

SF3B1_SCHPO/224-351---------------------------VNVVEEKLRPPV.RLLTEEELNELL..PSEGYAILEPPPGY..LESI....HP
A2QD06_ASPNC/214-359---------------------------GTDISARNAP.....LSDEELDMML..PSEGYKILEPPPGYAPIRNP....AR
A6R4S3_AJECN/239-380---------------------------GTDISSRNAP.....LSDEELDLML..PSEGYKILEPPPGYAPIRTP....AR
Q7RM47_PLAYO/216-370---------------------------KNEMDYRNRP.....LTDEDLDNLL..PIDGYEIVKPPEEYETIRKN....KL
A7AR82_BABBO/141-292---------------------------.....DRNRY.....LTDEELDEML..PSEGYEIIEPPEGYVASKHI....SY
A5KBA4_PLAVS/260-444---------------------------KNEMEIRNRP.....LTDEDLDELL..PSEGYEIVQPPEEYEAIRRN....KL
A0EEP7_PARTE/146-320---------------------------EKEMEERNKY.....MTDEELTSILPGPKDGYEILRAPENYKPLRSS....LK
Q86JC5_DICDI/46-202---------------------------QKEIDERNRP.....WTDEELDNIL..PSEGYEILQPPANYQPVI......AS
Q7ZYA4_XENLA/330-459---------------------------EREIDERNRP.....LSDEELDAMF..P.EGYKVLPPPAGYVPIRTP....AR
Q9FMF9_ARATH/282-420---------------------------EKDIEERNRP.....LSDEELDAMF..PKDGYKVLDPPATYVPIRTP....AR
Q7SDG6_NEUCR/235-368---------------------------GADAAGRYAP.....LSDEELDAMLPGPEQGYKILEPPPGYAPVRAP....AH
Q4YZD5_PLABA/213-360---------------------------KNEMDFRNRP.....LTDEDLDNLL..PSEGYEIVKPPEEYETIRKN....KL
O77327_PLAF7/280-462---------------------------KNEIDIRNRP.....LTDEDLDELL..PSEGYEIVQAPEEYEAIRNN....KL
A7S041_NEMVE/348-477---------------------------EREIDERNRV.....LSDDELNQLF..PKEGYKILDPPPGYQPIRTP....GR
Q5CWK2_CRYPI/31-168---------------------------TTSEEGRFHPPFQKEFTDEELDKIL..PSEGYEIVKPPEGYEKLRRANLENKR
Q4XWD8_PLACH/64-226---------------------------KNEMDFRNRP.....LTDEDLDNLL..PSEGYEIVKPPEEYEAIRKN....KL
Q0UV17_PHANO/224-356---------------------------GTDISNRNAP.....LSDEQLDLLLPGEKDGYKVLEAPPGYEPVRRP.....V
A0EE73_PARTE/146-326---------------------------EKEMEERNKY.....MTDEELTSILPGPKDGYEILKAPENYKPLKSS....LK
Q17F20_AEDAE/330-478---------------------------EKEIDERNRP.....FSDEELDAMF..P.AGYKVLPPPAGYIPIRTP....AR
A7ECQ4_SCLS1/227-361---------------------------GTDISSRNAP.....LSDEELDMML..PSEGYKILEPPPGYAPIRTI....AQ
Q5KBW5_CRYNJ/167-288---------------------------VLVEDKRYRR.....MTDEELDSLLPGSEEGYVVVPVPDDYHPAPS.....VR
Q4P3S2_USTMA/236-373---------------------------SIAVDPRNRY.....MSDEELDSIL..PSEGYKVVQPPPDYAPTRTP....AA
A4RTQ4_OSTLU/92-243---------------------------QREIEERNRP.....QTDEELDELL..PSEGYKILEPPASYVPIRTP....AR
Q4UCL9_THEAN/93-247---------------------------TTSYEDRNRY.....LTDEELDELL..PVEGYEIVLPPPDYQPYRKP....SS
Q6AHU1_PNECA/195-343---------------------------GTDVSQRFYD.....FSDEELDEIL..PVKGFKVLDPPPGYASIRTP....LR

PF12815

SPT5_CRYNJ/853-1001..........................TPAGNGAPTPAIPGNPYTAPTPYGAP--TPYAAPTPGMPSLS..APTP----G.
A2DFD4_TRIVA/628-775...........................KEEETPVEEKKEEETPAEEKKEEET--PVEEKKEEETPAEEKKEETP----A.
A7EGY2_SCLS1/880-1026..........................NNNWGSAYDAPTPGGPLSAPTPAAM.--.....NAP.TPGGYS.APTP----A.
A7RY25_NEMVE/136-220....................................................--..............LDSQTP----H.
A7SQI6_NEMVE/27-111....................................................--..............QSDLTP----L.
A7SVM3_NEMVE/131-300AFHTIYRTPAFHTIYRTPAFHTIYCTPAFHTIYRTPAFHTIYRTPAFHTIYR--TPAFHTIYRTPAFYTIYRTP----A.
A8P9L8_BRUMA/828-921..............................................SDDIHY--DEPSSPFNVPTPGAMNPHTP----G.
A8Q761_MALGO/803-917.......................................NPYGGGAPMGQTP--NPYSAPTP.NPYGGAGGRTP----A.
A8X0M4_CAEBR/815-905.............................................KTPAYGD--HDEHSSSRTPAYGNESGRTP----A.
B2ALM9_PODAN/800-954.......................GYTPGASGNSYDAPTPGAGLSAPTPGAF.--.....SAP.TPGAYT.APTP----A.
B2WAZ3_PYRTR/833-971.......................................SGGLSAPTPGAYN--AP.......TPGAYA.APTP----G.
B3MGG2_DROAN/814-927.................................LEEPSPSPGYNPSTPGYQM--TSQFAPQ..TPGTLYGSDRS----Y.
B5VPB8_YEAS6/256-376.....................................DRSAYGGASTWG...--...............GNNNN----K.
B6H820_PENCW/830-964..............................RDFDDAPTPGGNYSAPTPGAY.--.....AAP.TPG....APTP----G.
B6JZQ2_SCHJY/824-951...................................PWDNNDDDDASKPSADA--KGSAWTAP.TPGGWNDDDDG----D.
B6TCM6_MAIZE/32-159..............................TSAFGTPSSAPAFGALNFGTPS--STSAFGTPSSAPAFGATPSP----SP
B7PNC8_IXOSC/678-804......................................DDYQLEEASPSYQP--ATPGYQAPETPQGPYTPQTP----GM
B8MHU8_TALSN/831-972............................NNTGRYDAPTPGGDYSAPTPGAYP--.....TAP.TPGASGTAATP----R.
B8N9H1_ASPFN/700-841.............................DSRGYDAPTPGGAYSAPTPGAYA--.....SAP.TPGVS..APTP----G.
C1GYN5_PARBA/875-1030...........................GGSKSSYDAPTPGGDYTAPTPGPYG--.....AAL.TPGAT..AATP----R.
C5DLW2_LACTC/930-1055......................................KSSHGGGSVWGNRD--G........GTSTWGGGTSR----E.
C5FGI7_ARTOC/857-1010............................NTGRAFDAPTPGGDYAAPSPAPYG--.....SAP.TPGAS..AATP----R.
SPT5H_HUMAN/772-870.............................................EEYEYAF--DDEPTPSPQAYGGTPNPQTP----G.
SPT5_SCHPO/869-990....................................ETNWDTEDNSKPYTAP--TPGAWAAP.TPGGWDDEEGD----S.
Q2GQE5_CHAGB/784-915.......................GYTPGASGGAYDAPTPGAGLGAPTPAAL.--.....NAP.TPGAYS.APTP----A.
Q382Z6_TRYB2/41-149......................................GTPMFTGATPAAGM--AFGA.....TPNYQFEGTTP----V.
SPT5_GIBZE/851-991..........................DAWGPGSYDAPTPGGALGAPTPGAM.--.....NAP.TPGAYS.APTP----A.
SPT5_EMENI/826-962.............................DNKAYDAPTPGATYSAPTPGAYG--.....GAP.TPGLS..APTP----G.
Q5EFD5_TRYCR/42-155......................................TTPMFGGTTPAAGM--AFGV.....TPNHQFEGTTP----V.
SPT5_YARLI/814-957E....................DLGSGNSAPTPGYAAATPGEMMGAPTPGAAH--HPWEDSAP.TPAAYNDARTP----G.
SPT5_ASHGO/810-932.....................................DRSAYGGASTWGAAG--.........GASAWGGNKSH----H.
SPT5_NEUCR/861-1016T....................PGASGGGNSSSAYDAPTPGGGLSAPTPGAAL--.....NAP.TPGAYS.APTP----A.
ENPP_APLCA/361-543KRAPGYS........HSFVGKRAPGYSHSFVGKRVPGYSHSFVGKRAPGYSH--SFVGKRVPGYSHSFVGKRAP----G.

PF08920

SF3B1_SCHPO/224-351ELLQKGTTL......DTYHVPQEQELP.........LEKEL
A2QD06_ASPNC/214-359KLMATPAPMASATGVGGFMMQ.EPESAR.......AMGKQL
A6R4S3_AJECN/239-380KLMSTPAPMPSASGFGGFVMQ.EPENAR.......MMGKQL
Q7RM47_PLAYO/216-370KILFKNMNDTT....TTPLIQGNKNVNL.......N....L
A7AR82_BABBO/141-292HSHRGPET.......PSFVIKDENLRK..........PYDI
A5KBA4_PLAVS/260-444KAFFKTVASAA....GTPLLVGSGATG.........VATSL
A0EEP7_PARTE/146-320KLLNAKDSIES...PVQYQIP.ESIRI.........EVSAT
Q86JC5_DICDI/46-202KKLTASTPIGAAGTSGGFFIQEEQSRG.........QDFGI
Q7ZYA4_XENLA/330-459KLTATPTPLGG...LTGFHMP.TEDRS..........MKSV
Q9FMF9_ARATH/282-420KLQQTPTPMAT....PGYVIP.EENRG.........QQYDV
Q7SDG6_NEUCR/235-368KLMQAPAPT......TGFMMQ.DPDSGR.......MTGQQV
Q4YZD5_PLABA/213-360KILFKNMKDTT....TTPLIQGNTNI..............I
O77327_PLAF7/280-462KTMFKNTII......NTPLFP.QKPKG.............I
A7S041_NEMVE/348-477KLTATPTPMGG....QGFYMQ.QEDRS..........AKLV
Q5CWK2_CRYPI/31-168KLLEPKI........TLYDIP.EPTKS.........FQEEL
Q4XWD8_PLACH/64-226KILFKNMKDTT....TTPLIQGSTNIIINPGQSTLRTGDDT
Q0UV17_PHANO/224-356GMPALPTGY......QGFLIP.EADNS..........LAAM
A0EE73_PARTE/146-326KLLNAKNSIES...PVQYQIP.ESIRI.........EVSAT
Q17F20_AEDAE/330-478KLTATPTPMAGT..PAGFFIQ.AEDKS..........AKFI
A7ECQ4_SCLS1/227-361KVMATPLPA......GGFMMQ.DPDSGR.......QLAKQL
Q5KBW5_CRYNJ/167-288KMVPQQAE.......AGFMMQDETDAA........RARAAA
Q4P3S2_USTMA/236-373NLITVPSLET.....GGFMMQ.DEGATR.......AVLEEM
A4RTQ4_OSTLU/92-243KLMQTPMPYGSN..AGFFSIP.EEDRG.........QKFDV
Q4UCL9_THEAN/93-247YTYGTVT........PHFTIPDDVRKP...........YDI
Q6AHU1_PNECA/195-343KLVATPVFSND....GGFTMQ.EVDSA.........ANKQL

PF12815

SPT5_CRYNJ/853-1001..................PGAGIAPTP--------------
A2DFD4_TRIVA/628-775..................TEEKKEEES--------------
A7EGY2_SCLS1/880-1026....................AMNAPTP--------------
A7RY25_NEMVE/136-220..................YCDLDSQRP--------------
A7SQI6_NEMVE/27-111..................YYQQSDLTP--------------
A7SVM3_NEMVE/131-300..................FHTIYRTPA--------------
A8P9L8_BRUMA/828-921..................YNPDSSLGK--------------
A8Q761_MALGO/803-917..................YAGMAATPN--------------
A8X0M4_CAEBR/815-905..................YGNESGRTP--------------
B2ALM9_PODAN/800-954....................PISAPTP--------------
B2WAZ3_PYRTR/833-971.................GYGAYSAPTP--------------
B3MGG2_DROAN/814-927..................SPFNPSPSP--------------
B5VPB8_YEAS6/256-376..................STRDGGASA--------------
B6H820_PENCW/830-964..................GWPESAPTP--------------
B6JZQ2_SCHJY/824-951.................DSPKYVPPSP--------------
B6TCM6_MAIZE/32-159F..............GFQQQATPSPSP--------------
B7PNC8_IXOSC/678-804YGSDHGFSPYQASPSPTAYQPSPSPKG--------------
B8MHU8_TALSN/831-972...................WAESVPTP--------------
B8N9H1_ASPFN/700-841..................AWADSAPTP--------------
C1GYN5_PARBA/875-1030..................AWADSAPTP--------------
C5DLW2_LACTC/930-1055..................ANREGGNST--------------
C5FGI7_ARTOC/857-1010..................AWPDNAPTP--------------
SPT5H_HUMAN/772-870..................YPDPSSPQV--------------
SPT5_SCHPO/869-990...................PKYVPPSP--------------
Q2GQE5_CHAGB/784-915....................AVGAPTP--------------
Q382Z6_TRYB2/41-149..................QSHFAGGES--------------
SPT5_GIBZE/851-991....................AISAPTP--------------
SPT5_EMENI/826-962..................AWADSAPTP--------------
Q5EFD5_TRYCR/42-155..................QSRFAGGDS--------------
SPT5_YARLI/814-957..................VYDPRGSGP--------------
SPT5_ASHGO/810-932...................RPDGSNST--------------
SPT5_NEUCR/861-1016....................AVSAPTP--------------
ENPP_APLCA/361-543..................YSHSFVGKR--------------

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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