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117  structures 25863  species 18  interactions 144235  sequences 79  architectures

Clan: S4 (CL0492)

Summary

S4 domain superfamily Add an annotation

This superfamily includes diverse proteins related to the ribosomal S4 protein.

This clan contains 2 families and the total number of domains in the clan is 144235. The clan was built by A Bateman.

Members

This clan contains the following 2 member families:

S4 S4_2

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
S4 (PF01479) 131925 (91.5%) View
S4_2 (PF13275) 12310 (8.5%) View
Total: 2 Total: 144235 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 18 interactions for this clan. More...

Interacting families
A B
EFG_IV S4
PseudoU_synth_2 S4
Ribosom_S12_S23 S4
Ribosomal_L5 S4
Ribosomal_L5_C S4
Ribosomal_S24e S4
Ribosomal_S30 S4
Ribosomal_S4 S4
RS4NT S4
S4 FtsJ
KOW
PseudoU_synth_2
Ribosomal_S24e
Ribosomal_S30
Ribosomal_S4e
Ribosomal_S7e
RS4NT
S4

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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