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0  structures 435  species 0  interactions 14395  sequences 1051  architectures

Clan: GAG-polyprotein (CL0523)


LTR-copia-type polyprtien segments Add an annotation

This superfamily is characterised by family members that ar derived from retrotransposons of the copia-type.

This clan contains 8 families and the total number of domains in the clan is 14395. The clan was built by P Coggill.


This clan contains the following 8 member families:

DUF1759 DUF4219 DUF4939 PNMA Retrotrans_gag UBN2 UBN2_2 UBN2_3

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Retrotrans_gag (PF03732) 6306 (43.8%) View
UBN2 (PF14223) 2158 (15.0%) View
UBN2_2 (PF14227) 1681 (11.7%) View
DUF1759 (PF03564) 1556 (10.8%) View
UBN2_3 (PF14244) 1255 (8.7%) View
DUF4219 (PF13961) 664 (4.6%) View
DUF4939 (PF16297) 421 (2.9%) View
PNMA (PF14893) 354 (2.5%) View
Total: 8 Total: 14395 Clan alignment

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls


This tree shows the occurrence of the domains in this clan across different species. More...