Summary
LTR-copia-type polyprotein segment
This superfamily is characterised by family members that are derived from retrotransposons of the copia-type.
This clan contains 8 families and the total number of domains in the clan is 40252. The clan was built by P Coggill.
Members
This clan contains the following 8 member families:
DUF1759 DUF4219 DUF4939 DUF5314 PNMA Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gagDomain organisation
Below is a listing of the unique domain organisations or architectures from this clan. More...
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Alignments
The table below shows the number of occurrences of each domain throughout the sequence database. More...
Pfam family | Num. domains | Alignment |
---|---|---|
Retrotran_gag_2 (PF14223) | 15840 (39.4%) | View |
Retrotrans_gag (PF03732) | 14198 (35.3%) | View |
DUF1759 (PF03564) | 4299 (10.7%) | View |
Retrotran_gag_3 (PF14244) | 2359 (5.9%) | View |
DUF4219 (PF13961) | 1435 (3.6%) | View |
PNMA (PF14893) | 1063 (2.6%) | View |
DUF4939 (PF16297) | 1002 (2.5%) | View |
DUF5314 (PF17241) | 56 (0.1%) | View |
Total: 8 | Total: 40252 | Clan alignment |
Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.
Family relationships
This diagram shows the relationships between members of this clan. More...
Species distribution
Tree controls
HideThis tree shows the occurrence of the domains in this clan across different species. More...
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