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0  structures 256  species 0  interactions 8815  sequences 596  architectures

Clan: GAG-polyprotein (CL0523)

Summary

LTR-copia-type polyprtien segments Add an annotation

This superfamily is characterised by family members that ar derived from retrotransposons of the copia-type.

This clan contains 7 families and the total number of domains in the clan is 8815. The clan was built by P Coggill.

Members

This clan contains the following 7 member families:

DUF1759 DUF4219 DUF4939 PNMA Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Retrotrans_gag (PF03732) 3711 (42.1%) View
Retrotran_gag_2 (PF14223) 2724 (30.9%) View
DUF1759 (PF03564) 1133 (12.9%) View
DUF4219 (PF13961) 430 (4.9%) View
DUF4939 (PF16297) 382 (4.3%) View
PNMA (PF14893) 291 (3.3%) View
Retrotran_gag_3 (PF14244) 144 (1.6%) View
Total: 7 Total: 8815 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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