Sequence alignment for CL0535

PF14600

C6C568_DICDC/390-451TVSCSNVNVYPNWVSKDWSGGEYTHNNAG----EQMVYQG--TLYSA-NWYTA------SVPGSDG---------SWTLV
D2BWX3_DICD5/365-426TTSCANVNIYPNWVSKDWAGGQPDHNEAG----QSIVYQG--NLYTA-NWYTT------SVPGSDS---------SWTLV
C6CF34_DICZE/365-426TTNCSNTNVYPNWVSKDWAGGQPNHNEAG----QSIVYKG--NLYTA-NWYTT------STPGSDS---------SWTLV
GUNZ_DICD3/365-426TADCANANVYPNWVSKDWAGGQPTHNEAG----QSIVYKG--NLYTA-NWYTA------SVPGSDS---------SWTQV
Q9REW0_DICCH/365-426TADCANANVYPNWVSKDWAGGQPTHNEAG----QSIVYKG--NLYTA-NWYTS------SVPGSDS---------SWALV

PF02839

Q2SNL2_HAHCH/28-71--------------LSNWDAA.AVYVG.G....KTIQHKQ..NAYTA.NWWNQ.GA...DPEVRSGQ......WQEW---
Q2SMW1_HAHCH/27-69--------------VPEWKSN.AVYQG.G....DQAHTAN..TIYQA.RYWTQ.GD...DPTASGQW.......GPW---
Q7NY35_CHRVO/407-446--------------LQQWSAT.AAYSA.K....DCALYQG..KKYCA.KWWTQ.GN...LPAAGD..........PW---
Q7N4T2_PHOLL/519-563--------------YPVWDAN.RAYKA.G....DRVSWNN..QNWEA.KWWNR.GT...EPDGAGTSD.....AYPW---
Q7NR53_CHRVO/48-87--------------AAAWSPA.SPYQA.G....SVASRGG..VNYTA.AFWTQ.GN...PPEQGQ..........AW---
Q24UU5_DESHY/257-303--------------TNEWRSY.NVYNT.N....DEVQYEG..KTFKA.RHYSY.NK...QPGTVNPSSN...DEYPW---
Q82PC3_STRAW/410-453--------------SGVWAAG.RVYEV.G....AQVTYAG..VTYQC.LQSHQ.AQGVWQPAATPA.........LW---
A0KGX3_AERHH/821-860--------------QLGWDAG.VAYNA.G....DVTTHNG..RQWKA.QYWTR.GN...EPGKHD..........VW---
A0M250_GRAFK/940-981--------------LPSWSAT.NVYPDAG....TEIVYNG..NLYSN.KWHAS.TG...KEPGNSK.........VW---
Q2NTP4_SODGM/378-422--------------YPVWDKS.TIYQH.G....DRVTFDN..SDWEA.RWWNV.GQ...EPQVTTPSS.....DSTW---
Q24UU5_DESHY/162-203--------------YPAWNPN.IAYPN.T....TFVTYNG..KAFYN.RYYAN.HG...EVPGSMN........NPW---
Q6LUV1_PHOPR/339-382--------------TPQWAVG.DSYAE.G....DFVTHDD..ISYRAVVAHVA.QG...DWAPSSTS.......SLW---
Q2WA42_MAGSA/13-54--------------RGNYSAA.TAYAV.R....DVVTFNG..NTYRC.IVATT.AG...QSPTSTP........ASW---
Q7M8B2_WOLSU/445-485--------------LPNYAEG.TTYNT.N....DIVSHNG..ILYKR.TGASG.AS...DPYTDSA.........NW---
Q7NWT2_CHRVO/18-59--------------AAPWQAR.AIYQK.G....QTVQWQG..RDWQA.KWPTR.GE...TPGANPK........GSW---
Q5E665_VIBF1/38-80--------------LEAWDAG.KVYNG.G....EEVKQGT..NAYKA.KYWTQ.NN...DPATAGEW.......GAW---
Q8ED31_SHEON/883-923--------------APEWDSN.IAYFS.G....QLVKYQG..KLYSA.KQDVP.AG...TLPTNAT.........YW---
Q7VJR0_HELHP/394-432--------------LPEWNDN.TTYLE.G....DIVASEG..KIYRR...INQ.AG...NNPINEG.........NW---
A1SQY8_PSYIN/653-692--------------VATYLNT.NTYVL.N....DIVSHNG..KSYKC.TTAIN.SG...EEFTAL..........KW---
A9AZI8_HERA2/769-808--------------APAWESN.KIYVR.G....DVVSYNN..HHWFA.QWWTQ.NE...TPGNAQ..........VW---
A0KGX5_AERHH/83-129--------------ASAYDIN.QGYGG.G....SQVSFNG..QIYEA.KWYAN.PG...QSPGVQVANE...WDSPW---
Q08RQ9_STIAD/492-532--------------LAAGAPE.VTYPA.G....ALVMHDG..QLYRA.RSANT.NK...IPPANLS.........VW---
Q12EX9_POLSJ/56-94--------------DGPHETG.KVYDK.G....RFVTHDG..SLWHC.NYKTA.CR...PGDGP...........AW---
Q8ZS09_SALTY/646-693--------------YAQWDAS.TVYGA.NWGSFEIVSWKG..HNYQV.KWWSM.GN...QPDLNCGV......GGAW---
Q6LGY2_PHOPR/477-518--------------LEQWNAS.KVYLK.G....DEVSYNN..LRFLA.KWWNT.NE...EPGKDQW........GPW---
A0M250_GRAFK/885-924--------------VADWNVQ.TIYSDAG....TEVIYNG..LRYSN.KHYTT.EA...PGTGN...........AW---
A9B1U6_HERA2/34-78--------------APAWDGNYHAYAI.G....ARVSYAG..GEYECIQPHTS.LP...NWNPVDVP.......ALW---
Q5E571_VIBF1/395-436--------------QEEWKPH.QVYIK.G....ETVNFQG..KMWQA.QWWTQ.LQ...QPGLTES........SPW---
A0M250_GRAFK/1003-1044--------------ASVWNPK.AVYKETG....SLVIFNG..TLYSN.KWYAS.AG...REPGKAN.........VW---
A1TN30_ACIAC/29-72--------------YPAWASG.TTYAV.G....ARVIHLGTHKVYQS.AQDGN.VG...KDPTTTL........GFW---
Q9HR83_HALSA/32-73--------------PPEWDPD.TVYTD.G....DKATFDG..YVWEA.KWWTK.GD...KPGADEW........GPW---
B3PG16_CELJU/28-68--------------APAWSST.TQYKG.G....EAVVYQG..GAFKA.RWWANVGV...APDTSN..........PW---
B7VRF8_VIBSL/38-75--------------.EAWDPA.TVYTG.G....DQVSHDG..SAYKA.NYWNQ.NN...NPNQFEG...........---
CHIA_ECOLI/460-508--------------.KAWSAS.TVYVK.G....DRVVVDG..QAYEA.LFWTQ.SD...NPALVANQNATGSNSRPW---
Q5NEP3_FRATT/314-357--------------.GTWDPT.KEYVA.G....DTVEING..VKYAA.QWWNK.GV...NPVENHTQY.....QDPW---
Q5NGL9_FRATT/226-267--------------..TYDPS.KSYPTPG....TEVVFDG..KVYQN.KWYVN.TG...QQPGAEQW.......GPW---
Q5NGW2_FRATT/673-711--------------.GNWNAE.AVYNK.G....DKVIVNG..VTYEA.QWWTQ.GN...NPADGG..........AW---
Q5NGW2_FRATT/719-757--------------.EAWSQG.QAYTG.G....QVVTYQG..AKYKA.KWWTQ.GD...IPSNSN..........VW---
Q87HX4_VIBPA/1011-1048--------------..DWAGN.PSHANQG....DKVIHNG..VVYQA.NWWTA.SE...PGSDGS...........W---
Q87S05_VIBPA/437-475--------------.AAWDSG.KVYNT.G....DQVSYQG..AVYEA.KWWSQ.GN...EPTKGD..........PW---
Q8Y4H4_LISMO/390-428--------------.NTWKSD.QIYNA.G....DQVYYNG..VAYTA.KWWTK.GN...TPDTSD..........VW---
Q9KND8_VIBCH/799-838--------------...WNAE.SIYTG.G....QQVTWAG..KTWEA.KWWTR.GE...DPSKSGQW.......GVW---

PF14600

C6C568_DICDC/390-451GTCG
D2BWX3_DICD5/365-426GSCN
C6CF34_DICZE/365-426GSCN
GUNZ_DICD3/365-426GSCN
Q9REW0_DICCH/365-426GSCN

PF02839

Q2SNL2_HAHCH/28-71----
Q2SMW1_HAHCH/27-69----
Q7NY35_CHRVO/407-446----
Q7N4T2_PHOLL/519-563----
Q7NR53_CHRVO/48-87----
Q24UU5_DESHY/257-303----
Q82PC3_STRAW/410-453----
A0KGX3_AERHH/821-860----
A0M250_GRAFK/940-981----
Q2NTP4_SODGM/378-422----
Q24UU5_DESHY/162-203----
Q6LUV1_PHOPR/339-382----
Q2WA42_MAGSA/13-54----
Q7M8B2_WOLSU/445-485----
Q7NWT2_CHRVO/18-59----
Q5E665_VIBF1/38-80----
Q8ED31_SHEON/883-923----
Q7VJR0_HELHP/394-432----
A1SQY8_PSYIN/653-692----
A9AZI8_HERA2/769-808----
A0KGX5_AERHH/83-129----
Q08RQ9_STIAD/492-532----
Q12EX9_POLSJ/56-94----
Q8ZS09_SALTY/646-693----
Q6LGY2_PHOPR/477-518----
A0M250_GRAFK/885-924----
A9B1U6_HERA2/34-78----
Q5E571_VIBF1/395-436----
A0M250_GRAFK/1003-1044----
A1TN30_ACIAC/29-72----
Q9HR83_HALSA/32-73----
B3PG16_CELJU/28-68----
B7VRF8_VIBSL/38-75----
CHIA_ECOLI/460-508----
Q5NEP3_FRATT/314-357----
Q5NGL9_FRATT/226-267----
Q5NGW2_FRATT/673-711----
Q5NGW2_FRATT/719-757----
Q87HX4_VIBPA/1011-1048----
Q87S05_VIBPA/437-475----
Q8Y4H4_LISMO/390-428----
Q9KND8_VIBCH/799-838----

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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