Sequence alignment for CL0535

PF14600

U4KI49_9VIBR/28-88ADVCAGINEYPNWPQVDWAGNP.NHAKKG----DQMQYQG--KAYTA-NWHTS------SIPGSDG---------SWTFA
Q15W09_PSEA6/396-457GIDCSAINSYPNWVQADYPGGTNNHNDTG----DQMQYQG--NAYEA-NWYTN------SLPGSDS---------SWVLL
Q21PD4_SACD2/511-572VASCDGVNEYPSWTAKDWSGGDYNHANSG----DYMSYQG--VLYRA-NWYTA------TVPGSDS---------SWTRV
C5BJH7_TERTT/482-543GNICDGINEYPNWTAQDWPGGPYNHANAL----DKMVYQG--GLYEA-NWYTS------SVPGSDP---------SWLSL
C5BLQ7_TERTT/1263-1324GSNCAGVNVYPNWTAKDWAGGEFNHADAG----DQMVYQN--TLYVA-NWYTA------TVPGSDQ---------SWTSL
C5BRL9_TERTT/336-397GGSCAGVNVYPNWTARDWSGGAYNHANAG----DQMVYQN--TLYSA-NWYTN------SVPGSDA---------SWTRV
C5BT62_TERTT/554-615GGSCAGINEYPDWTARDWSGGDYNHANAG----DQMVYSG--ALYAA-NWYTN------TVPGSDA---------SWTFI
C5BNA7_TERTT/720-781GGTCADVNVYPNWTARDWAGGVPNHAEAG----DLMVYQG--TVYQA-NWYTN------SVPGSDA---------SWTNQ
C5BPZ6_TERTT/386-447GNGCEVFNHYPNWTAKDWAGGAYNHANAG----DQMIYSG--NLYQA-NWYTN------SIPGSDA---------SWQFL
C5BK65_TERTT/573-634GGDCAGVNEYPNWTAKDWAGGVANHAEAG----DQMVYQS--TLYKA-NWYTN------SIPGSDA---------SWTTL
C5BMU1_TERTT/25-86AANCSNVNVYPDWTARDWSGGPFNHANAG----DQMVYQN--TLYSA-NWYTT------AVPGSDP---------SWTSV

PF02839

Q2SNL2_HAHCH/28-71--------------LSNWDAA.AVYVG.G....KTIQHKQ..NAYTA.NWWNQ.GA...DPEVRSGQ......WQEW---
Q2SMW1_HAHCH/27-69--------------VPEWKSN.AVYQG.G....DQAHTAN..TIYQA.RYWTQ.GD...DPTASGQW.......GPW---
Q7NY35_CHRVO/407-446--------------LQQWSAT.AAYSA.K....DCALYQG..KKYCA.KWWTQ.GN...LPAAGD..........PW---
Q7N4T2_PHOLL/519-563--------------YPVWDAN.RAYKA.G....DRVSWNN..QNWEA.KWWNR.GT...EPDGAGTSD.....AYPW---
Q7NR53_CHRVO/48-87--------------AAAWSPA.SPYQA.G....SVASRGG..VNYTA.AFWTQ.GN...PPEQGQ..........AW---
Q24UU5_DESHY/257-303--------------TNEWRSY.NVYNT.N....DEVQYEG..KTFKA.RHYSY.NK...QPGTVNPSSN...DEYPW---
Q82PC3_STRAW/410-453--------------SGVWAAG.RVYEV.G....AQVTYAG..VTYQC.LQSHQ.AQGVWQPAATPA.........LW---
A0KGX3_AERHH/821-860--------------QLGWDAG.VAYNA.G....DVTTHNG..RQWKA.QYWTR.GN...EPGKHD..........VW---
A0M250_GRAFK/940-981--------------LPSWSAT.NVYPDAG....TEIVYNG..NLYSN.KWHAS.TG...KEPGNSK.........VW---
Q2NTP4_SODGM/378-422--------------YPVWDKS.TIYQH.G....DRVTFDN..SDWEA.RWWNV.GQ...EPQVTTPSS.....DSTW---
Q24UU5_DESHY/162-203--------------YPAWNPN.IAYPN.T....TFVTYNG..KAFYN.RYYAN.HG...EVPGSMN........NPW---
Q6LUV1_PHOPR/339-382--------------TPQWAVG.DSYAE.G....DFVTHDD..ISYRAVVAHVA.QG...DWAPSSTS.......SLW---
Q2WA42_MAGSA/13-54--------------RGNYSAA.TAYAV.R....DVVTFNG..NTYRC.IVATT.AG...QSPTSTP........ASW---
Q7M8B2_WOLSU/445-485--------------LPNYAEG.TTYNT.N....DIVSHNG..ILYKR.TGASG.AS...DPYTDSA.........NW---
Q7NWT2_CHRVO/18-59--------------AAPWQAR.AIYQK.G....QTVQWQG..RDWQA.KWPTR.GE...TPGANPK........GSW---
Q5E665_VIBF1/38-80--------------LEAWDAG.KVYNG.G....EEVKQGT..NAYKA.KYWTQ.NN...DPATAGEW.......GAW---
Q8ED31_SHEON/883-923--------------APEWDSN.IAYFS.G....QLVKYQG..KLYSA.KQDVP.AG...TLPTNAT.........YW---
Q7VJR0_HELHP/394-432--------------LPEWNDN.TTYLE.G....DIVASEG..KIYRR...INQ.AG...NNPINEG.........NW---
A1SQY8_PSYIN/653-692--------------VATYLNT.NTYVL.N....DIVSHNG..KSYKC.TTAIN.SG...EEFTAL..........KW---
A9AZI8_HERA2/769-808--------------APAWESN.KIYVR.G....DVVSYNN..HHWFA.QWWTQ.NE...TPGNAQ..........VW---
A0KGX5_AERHH/83-129--------------ASAYDIN.QGYGG.G....SQVSFNG..QIYEA.KWYAN.PG...QSPGVQVANE...WDSPW---
Q08RQ9_STIAD/492-532--------------LAAGAPE.VTYPA.G....ALVMHDG..QLYRA.RSANT.NK...IPPANLS.........VW---
Q12EX9_POLSJ/56-94--------------DGPHETG.KVYDK.G....RFVTHDG..SLWHC.NYKTA.CR...PGDGP...........AW---
Q8ZS09_SALTY/646-693--------------YAQWDAS.TVYGA.NWGSFEIVSWKG..HNYQV.KWWSM.GN...QPDLNCGV......GGAW---
Q6LGY2_PHOPR/477-518--------------LEQWNAS.KVYLK.G....DEVSYNN..LRFLA.KWWNT.NE...EPGKDQW........GPW---
A0M250_GRAFK/885-924--------------VADWNVQ.TIYSDAG....TEVIYNG..LRYSN.KHYTT.EA...PGTGN...........AW---
A9B1U6_HERA2/34-78--------------APAWDGNYHAYAI.G....ARVSYAG..GEYECIQPHTS.LP...NWNPVDVP.......ALW---
Q5E571_VIBF1/395-436--------------QEEWKPH.QVYIK.G....ETVNFQG..KMWQA.QWWTQ.LQ...QPGLTES........SPW---
A0M250_GRAFK/1003-1044--------------ASVWNPK.AVYKETG....SLVIFNG..TLYSN.KWYAS.AG...REPGKAN.........VW---
A1TN30_ACIAC/29-72--------------YPAWASG.TTYAV.G....ARVIHLGTHKVYQS.AQDGN.VG...KDPTTTL........GFW---
Q9HR83_HALSA/32-73--------------PPEWDPD.TVYTD.G....DKATFDG..YVWEA.KWWTK.GD...KPGADEW........GPW---
B3PG16_CELJU/28-68--------------APAWSST.TQYKG.G....EAVVYQG..GAFKA.RWWANVGV...APDTSN..........PW---
B7VRF8_VIBTL/38-75--------------.EAWDPA.TVYTG.G....DQVSHDG..SAYKA.NYWNQ.NN...NPNQFEG...........---
CHIA_ECOLI/460-508--------------.KAWSAS.TVYVK.G....DRVVVDG..QAYEA.LFWTQ.SD...NPALVANQNATGSNSRPW---
Q5NEP3_FRATT/314-357--------------.GTWDPT.KEYVA.G....DTVEING..VKYAA.QWWNK.GV...NPVENHTQY.....QDPW---
Q5NGL9_FRATT/226-267--------------..TYDPS.KSYPTPG....TEVVFDG..KVYQN.KWYVN.TG...QQPGAEQW.......GPW---
Q5NGW2_FRATT/673-711--------------.GNWNAE.AVYNK.G....DKVIVNG..VTYEA.QWWTQ.GN...NPADGG..........AW---
Q5NGW2_FRATT/719-757--------------.EAWSQG.QAYTG.G....QVVTYQG..AKYKA.KWWTQ.GD...IPSNSN..........VW---
Q87HX4_VIBPA/1011-1048--------------..DWAGN.PSHANQG....DKVIHNG..VVYQA.NWWTA.SE...PGSDGS...........W---
Q87S05_VIBPA/437-475--------------.AAWDSG.KVYNT.G....DQVSYQG..AVYEA.KWWSQ.GN...EPTKGD..........PW---
Q8Y4H4_LISMO/390-428--------------.NTWKSD.QIYNA.G....DQVYYNG..VAYTA.KWWTK.GN...TPDTSD..........VW---
Q9KND8_VIBCH/799-838--------------...WNAE.SIYTG.G....QQVTWAG..KTWEA.KWWTR.GE...DPSKSGQW.......GVW---

PF14600

U4KI49_9VIBR/28-88FDCA
Q15W09_PSEA6/396-457GSCG
Q21PD4_SACD2/511-572GDCN
C5BJH7_TERTT/482-543GACA
C5BLQ7_TERTT/1263-1324GACQ
C5BRL9_TERTT/336-397GACG
C5BT62_TERTT/554-615SSCD
C5BNA7_TERTT/720-781GLCA
C5BPZ6_TERTT/386-447RSCN
C5BK65_TERTT/573-634GSCG
C5BMU1_TERTT/25-86GACD

PF02839

Q2SNL2_HAHCH/28-71----
Q2SMW1_HAHCH/27-69----
Q7NY35_CHRVO/407-446----
Q7N4T2_PHOLL/519-563----
Q7NR53_CHRVO/48-87----
Q24UU5_DESHY/257-303----
Q82PC3_STRAW/410-453----
A0KGX3_AERHH/821-860----
A0M250_GRAFK/940-981----
Q2NTP4_SODGM/378-422----
Q24UU5_DESHY/162-203----
Q6LUV1_PHOPR/339-382----
Q2WA42_MAGSA/13-54----
Q7M8B2_WOLSU/445-485----
Q7NWT2_CHRVO/18-59----
Q5E665_VIBF1/38-80----
Q8ED31_SHEON/883-923----
Q7VJR0_HELHP/394-432----
A1SQY8_PSYIN/653-692----
A9AZI8_HERA2/769-808----
A0KGX5_AERHH/83-129----
Q08RQ9_STIAD/492-532----
Q12EX9_POLSJ/56-94----
Q8ZS09_SALTY/646-693----
Q6LGY2_PHOPR/477-518----
A0M250_GRAFK/885-924----
A9B1U6_HERA2/34-78----
Q5E571_VIBF1/395-436----
A0M250_GRAFK/1003-1044----
A1TN30_ACIAC/29-72----
Q9HR83_HALSA/32-73----
B3PG16_CELJU/28-68----
B7VRF8_VIBTL/38-75----
CHIA_ECOLI/460-508----
Q5NEP3_FRATT/314-357----
Q5NGL9_FRATT/226-267----
Q5NGW2_FRATT/673-711----
Q5NGW2_FRATT/719-757----
Q87HX4_VIBPA/1011-1048----
Q87S05_VIBPA/437-475----
Q8Y4H4_LISMO/390-428----
Q9KND8_VIBCH/799-838----

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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