Sequence alignment for CL0535

PF14600

U4KI49_9VIBR/28-88ADVCAGINEYPNWPQVDWAGNP.NHAKKGDQMQYQG--KAYTA-NWHTS------SIPGSDG---------SWTFAFDCA
Q15W09_PSEA6/396-457GIDCSAINSYPNWVQADYPGGTNNHNDTGDQMQYQG--NAYEA-NWYTN------SLPGSDS---------SWVLLGSCG
Q21PD4_SACD2/511-572VASCDGVNEYPSWTAKDWSGGDYNHANSGDYMSYQG--VLYRA-NWYTA------TVPGSDS---------SWTRVGDCN
C5BJH7_TERTT/482-543GNICDGINEYPNWTAQDWPGGPYNHANALDKMVYQG--GLYEA-NWYTS------SVPGSDP---------SWLSLGACA
C5BLQ7_TERTT/1263-1324GSNCAGVNVYPNWTAKDWAGGEFNHADAGDQMVYQN--TLYVA-NWYTA------TVPGSDQ---------SWTSLGACQ
C5BRL9_TERTT/336-397GGSCAGVNVYPNWTARDWSGGAYNHANAGDQMVYQN--TLYSA-NWYTN------SVPGSDA---------SWTRVGACG
C5BT62_TERTT/554-615GGSCAGINEYPDWTARDWSGGDYNHANAGDQMVYSG--ALYAA-NWYTN------TVPGSDA---------SWTFISSCD
C5BNA7_TERTT/720-781GGTCADVNVYPNWTARDWAGGVPNHAEAGDLMVYQG--TVYQA-NWYTN------SVPGSDA---------SWTNQGLCA
C5BPZ6_TERTT/386-447GNGCEVFNHYPNWTAKDWAGGAYNHANAGDQMIYSG--NLYQA-NWYTN------SIPGSDA---------SWQFLRSCN
C5BK65_TERTT/573-634GGDCAGVNEYPNWTAKDWAGGVANHAEAGDQMVYQS--TLYKA-NWYTN------SIPGSDA---------SWTTLGSCG
C5BMU1_TERTT/25-86AANCSNVNVYPDWTARDWSGGPFNHANAGDQMVYQN--TLYSA-NWYTT------AVPGSDP---------SWTSVGACD

PF02839

Q2SNL2_HAHCH/45-71---------------------------------HKQ..NAYTA.NWWNQ.GA...DPEVRSGQ......WQEW-------
Q2SMW1_HAHCH/44-69---------------------------------TAN..TIYQA.RYWTQ.GD...DPTASGQW.......GPW-------
Q7NY35_CHRVO/424-446---------------------------------YQG..KKYCA.KWWTQ.GN...LPAAGD..........PW-------
Q7N4T2_PHOLL/536-563---------------------------------WNN..QNWEA.KWWNR.GT...EPDGAGTSD.....AYPW-------
Q7NR53_CHRVO/65-87---------------------------------RGG..VNYTA.AFWTQ.GN...PPEQGQ..........AW-------
Q24UU5_DESHY/274-303---------------------------------YEG..KTFKA.RHYSY.NK...QPGTVNPSSN...DEYPW-------
Q82PC3_STRAW/427-453---------------------------------YAG..VTYQC.LQSHQ.AQGVWQPAATPA.........LW-------
A0KGX3_AERHH/838-860---------------------------------HNG..RQWKA.QYWTR.GN...EPGKHD..........VW-------
A0M250_GRAFK/958-981---------------------------------YNG..NLYSN.KWHAS.TG...KEPGNSK.........VW-------
Q2NTP4_SODGM/395-422---------------------------------FDN..SDWEA.RWWNV.GQ...EPQVTTPSS.....DSTW-------
Q24UU5_DESHY/179-203---------------------------------YNG..KAFYN.RYYAN.HG...EVPGSMN........NPW-------
Q6LUV1_PHOPR/356-382---------------------------------HDD..ISYRAVVAHVA.QG...DWAPSSTS.......SLW-------
Q2WA42_MAGSA/30-54---------------------------------FNG..NTYRC.IVATT.AG...QSPTSTP........ASW-------
Q7M8B2_WOLSU/462-485---------------------------------HNG..ILYKR.TGASG.AS...DPYTDSA.........NW-------
Q7NWT2_CHRVO/35-59---------------------------------WQG..RDWQA.KWPTR.GE...TPGANPK........GSW-------
Q5E665_VIBF1/55-80---------------------------------QGT..NAYKA.KYWTQ.NN...DPATAGEW.......GAW-------
Q8ED31_SHEON/900-923---------------------------------YQG..KLYSA.KQDVP.AG...TLPTNAT.........YW-------
Q7VJR0_HELHP/411-432---------------------------------SEG..KIYRR...INQ.AG...NNPINEG.........NW-------
A1SQY8_PSYIN/670-692---------------------------------HNG..KSYKC.TTAIN.SG...EEFTAL..........KW-------
A9AZI8_HERA2/786-808---------------------------------YNN..HHWFA.QWWTQ.NE...TPGNAQ..........VW-------
A0KGX5_AERHH/100-129---------------------------------FNG..QIYEA.KWYAN.PG...QSPGVQVANE...WDSPW-------
Q08RQ9_STIAD/509-532---------------------------------HDG..QLYRA.RSANT.NK...IPPANLS.........VW-------
Q12EX9_POLSJ/73-94---------------------------------HDG..SLWHC.NYKTA.CR...PGDGP...........AW-------
Q8ZS09_SALTY/667-693---------------------------------WKG..HNYQV.KWWSM.GN...QPDLNCGV......GGAW-------
Q6LGY2_PHOPR/494-518---------------------------------YNN..LRFLA.KWWNT.NE...EPGKDQW........GPW-------
A0M250_GRAFK/903-924---------------------------------YNG..LRYSN.KHYTT.EA...PGTGN...........AW-------
A9B1U6_HERA2/52-78---------------------------------YAG..GEYECIQPHTS.LP...NWNPVDVP.......ALW-------
Q5E571_VIBF1/412-436---------------------------------FQG..KMWQA.QWWTQ.LQ...QPGLTES........SPW-------
A0M250_GRAFK/1021-1044---------------------------------FNG..TLYSN.KWYAS.AG...REPGKAN.........VW-------
A1TN30_ACIAC/46-72---------------------------------HLGTHKVYQS.AQDGN.VG...KDPTTTL........GFW-------
Q9HR83_HALSA/49-73---------------------------------FDG..YVWEA.KWWTK.GD...KPGADEW........GPW-------
B3PG16_CELJU/45-68---------------------------------YQG..GAFKA.RWWANVGV...APDTSN..........PW-------
B7VRF8_VIBTL/54-75---------------------------------HDG..SAYKA.NYWNQ.NN...NPNQFEG...........-------
CHIA_ECOLI/476-508---------------------------------VDG..QAYEA.LFWTQ.SD...NPALVANQNATGSNSRPW-------
Q5NEP3_FRATT/330-357---------------------------------ING..VKYAA.QWWNK.GV...NPVENHTQY.....QDPW-------
Q5NGL9_FRATT/242-267---------------------------------FDG..KVYQN.KWYVN.TG...QQPGAEQW.......GPW-------
Q5NGW2_FRATT/689-711---------------------------------VNG..VTYEA.QWWTQ.GN...NPADGG..........AW-------
Q5NGW2_FRATT/735-757---------------------------------YQG..AKYKA.KWWTQ.GD...IPSNSN..........VW-------
Q87HX4_VIBPA/1027-1048---------------------------------HNG..VVYQA.NWWTA.SE...PGSDGS...........W-------
Q87S05_VIBPA/453-475---------------------------------YQG..AVYEA.KWWSQ.GN...EPTKGD..........PW-------
Q8Y4H4_LISMO/406-428---------------------------------YNG..VAYTA.KWWTK.GN...TPDTSD..........VW-------
Q9KND8_VIBCH/813-838---------------------------------WAG..KTWEA.KWWTR.GE...DPSKSGQW.......GVW-------

This alignment is coloured according to the ClustalX colouring scheme:

 
Glycine (G)
 
Proline (P)
 
Small or hydrophobic (C,A,V,L,I,M,F,W)
 
Hydroxyl or amine amino acids (S,T,N,Q)
 
Charged amino-acids (D,E,R,K)
 
Histidine or tyrosine (H,Y)

For UniProt-based alignments, we also add some additional mark-up to the alignments where appropriate. Active site information is shown as follows:

 
Active site (residue annotated in SwissProt as an active site)
 
Predicted active site (residue aligns in a Pfam alignment with a SwissProt active site)
 
Predicted active site (residue annotated in SwissProt as a potential active site)

Some UniProt sequences can be mapped to protein structures, in which case we also show the secondary structure definition. These lines are shown below the sequence to which they apply and are marked (SS). The meaning of each of the symbols is as follows:

C
Random coil
H
Alpha-helix
G
3(10) helix
I
Pi-helix
E
Hydrogen bonded beta-strand (extended strand)
B
Residue in isolated beta-bridge
T
H-bonded turn (3-turn, 4-turn, or 5-turn)
S
Bend (five-residue bend centered at residue i)
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