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32  structures 929  species 2  interactions 2591  sequences 171  architectures

Clan: STARBD (CL0576)

Summary

Starch-binding domain like superfamily Add an annotation

This is a superfamily of starch-binding domains thta are distinct from the CBM, carbohydrate-binding superfamily. STARBD ares characterised by a beta-sandwich arranged as a greek key, of seven betA-strands in two sheets, with some members having additionlly one or two strands.

This clan contains 4 families and the total number of domains in the clan is 2591. The clan was built by P Coggill.

Members

This clan contains the following 4 member families:

CBM26 CBM53 CBM_21 CBM_25

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
CBM_21 (PF03370) 1520 (58.7%) View
CBM53 (PF16760) 573 (22.1%) View
CBM26 (PF16738) 292 (11.3%) View
CBM_25 (PF03423) 206 (8.0%) View
Total: 4 Total: 2591 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
CBM_21 CBM_21
CBM_25 CBM_25

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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