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150  structures 4144  species 5  interactions 16670  sequences 116  architectures

Clan: TrkA_C (CL0582)

Summary

TrkA C-terminal domain-like Add an annotation

This superfamily is characterised by families that form part of voltage-gated ion channels found in a wide range of bacteria, archaea, eukaryotes and viruses.

This clan contains 3 families and the total number of domains in the clan is 16670. The clan was built by P Coggill.

Members

This clan contains the following 3 member families:

BK_channel_a Castor_Poll_mid TrkA_C

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
TrkA_C (PF02080) 14768 (88.6%) View
BK_channel_a (PF03493) 1424 (8.5%) View
Castor_Poll_mid (PF06241) 478 (2.9%) View
Total: 3 Total: 16670 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
PhoU TrkA_C
TrkA_C TrkA_C
TrkA_N
TrkA_N BK_channel_a
TrkA_C

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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