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253  structures 98  species 7  interactions 222  sequences 14  architectures

Clan: ssDNA_NP_VP (CL0605)

Summary

ssDNA viruses Nucleoplasmin-like/VP coat superfamily Add an annotation

According to SCOP this superfamily includes proteins that have a beta sandwich fold with two sheets in a jelly roll topology. Families in this superfamily belong to various ssDNA viruses.

This clan contains 4 families and the total number of domains in the clan is 222. The clan was built by A Bateman.

Members

This clan contains the following 4 member families:

Denso_VP4 Parvo_coat Phage_F Phage_G

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Phage_F (PF02305) 154 (69.4%) View
Phage_G (PF02306) 36 (16.2%) View
Denso_VP4 (PF02336) 20 (9.0%) View
Parvo_coat (PF00740) 12 (5.4%) View
Total: 4 Total: 222 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 7 interactions for this clan. More...

Interacting families
A B
gpD Phage_F
Phage_G
Parvo_coat Parvo_coat
Phage_F Microvir_J
Phage_B
Phage_F
Phage_G

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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