Please note: this site relies heavily on the use of javascript. Without a javascript-enabled browser, this site will not function correctly. Please enable javascript and reload the page, or switch to a different browser.
90  structures 5326  species 19  interactions 47909  sequences 251  architectures

Clan: PseudoU_synth (CL0649)

Summary

Pseudouridine synthase superfamily Add an annotation

This superfamily was built based on the ECOD classification.

This clan contains 7 families and the total number of domains in the clan is 47909. The clan was built by A Bateman.

Members

This clan contains the following 7 member families:

DKCLD DUF2344 PseudoU_synth_1 PseudoU_synth_2 TruB_C_2 TruB_N TruD

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...

Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
PseudoU_synth_2 (PF00849) 21961 (45.8%) View
PseudoU_synth_1 (PF01416) 10258 (21.4%) View
TruB_N (PF01509) 5943 (12.4%) View
TruB_C_2 (PF16198) 4863 (10.2%) View
TruD (PF01142) 2879 (6.0%) View
DKCLD (PF08068) 1046 (2.2%) View
DUF2344 (PF10105) 959 (2.0%) View
Total: 7 Total: 47909 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls

Hide

This tree shows the occurrence of the domains in this clan across different species. More...

Loading...

Interactions

There are 19 interactions for this clan. More...

Interacting families
A B
DKCLD DKCLD
Nop10p
PUA
TruB_N
Nop10p TruB_N
PseudoU_synth_1 PseudoU_synth_1
PseudoU_synth_2 PseudoU_synth_2
S4
PUA DKCLD
S4 PseudoU_synth_2
SHQ1 DKCLD
TruB_N Gar1
Nop10p
PUA
SHQ1
TruB-C_2
TruB_C
TruB_N
TruD TruD

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...