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18  structures 7  species 8  interactions 22  sequences 6  architectures

Clan: VCCI (CL0653)

Summary

VCCI superfamily superfamily Add an annotation

This superfamily is defined by SCOP based on the soluble secreted chemikine inhibitor from cowpox virus.

This clan contains 4 families and the total number of domains in the clan is 22. The clan was built by A Bateman.

Members

This clan contains the following 4 member families:

DUF1406 Orthopox_35kD Pox_T4_C Pox_T4_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
DUF1406 (PF07190) 8 (36.4%) View
Orthopox_35kD (PF02250) 7 (31.8%) View
Pox_T4_N (PF04491) 4 (18.2%) View
Pox_T4_C (PF04490) 3 (13.6%) View
Total: 4 Total: 22 Clan alignment
 

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 8 interactions for this clan. More...

Interacting families
A B
C1-set Pox_T4_C
Pox_T4_N
DUF1406 DUF1406
IL8
MHC_I Pox_T4_C
Orthopox_35kD IL8
Orthopox_35kD
Pox_T4_N Pox_T4_C

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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