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81  structures 1025  species 5  interactions 3754  sequences 70  architectures

Clan: Cdc48_2-like (CL0402)

Summary

Cdc48 domain 2-like Add an annotation

Superfamily contains C-terminal domains of N-ethylmaleimide sensitive fusion proteins, VCP-like ATPases, membrane fusion ATPase p97 domain 2, peroxisome biogenesis factor 1 (PEX-1), domain 2, and ubiquitin fusion degradation protein UFD1 families.

This clan contains 3 families and the total number of domains in the clan is 3754. The clan was built by P Coggill.

Members

This clan contains the following 3 member families:

CDC48_2 PEX-1N UFD1

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
CDC48_2 (PF02933) 2051 (54.6%) View
UFD1 (PF03152) 1185 (31.6%) View
PEX-1N (PF09262) 518 (13.8%) View
Total: 3 Total: 3754 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
CDC48_2 CDC48_N
UBX
CDC48_N CDC48_2
PEX-2N PEX-1N
UN_NPL4 CDC48_2

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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