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175  structures 20427  species 18  interactions 48796  sequences 302  architectures

Clan: DSRM (CL0196)

Summary

DSRM-like clan Add an annotation

This clan contains RNA-binding domains.

This clan contains 5 families and the total number of domains in the clan is 48796. The clan was built by A Bateman.

Members

This clan contains the following 5 member families:

Dicer_dimer DND1_DSRM dsrm Ribosomal_S5 Staufen_C

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
dsrm (PF00035) 25618 (52.5%) View
Ribosomal_S5 (PF00333) 21241 (43.5%) View
Dicer_dimer (PF03368) 976 (2.0%) View
DND1_DSRM (PF14709) 511 (1.0%) View
Staufen_C (PF16482) 450 (0.9%) View
Total: 5 Total: 48796 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 18 interactions for this clan. More...

Interacting families
A B
dsrm dsrm
Ribonucleas_3_3 dsrm
Ribonuclease_3 dsrm
Ribosomal_S2 Ribosomal_S5
Ribosomal_S21e Ribosomal_S5
Ribosomal_S28e Ribosomal_S5
Ribosomal_S3_C Ribosomal_S5
Ribosomal_S4 Ribosomal_S5
Ribosomal_S5 RF-1
Ribosomal_L6
Ribosomal_S2
Ribosomal_S21e
Ribosomal_S30
Ribosomal_S3_C
Ribosomal_S5_C
Ribosomal_S7e
Ribosomal_S8
WD40 Ribosomal_S5

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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