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6  structures 1882  species 0  interactions 7823  sequences 33  architectures

Clan: EpsM (CL0331)

Summary

General secretion pathway protein M Add an annotation

These families are involved in the general secretory pathways of bacteria and are normally membrane-bound.

This clan contains 8 families and the total number of domains in the clan is 7823. The clan was built by P Coggill.

Members

This clan contains the following 8 member families:

DUF2514 GspL_C HemX Phage_lysis PilN PilO T2SM T2SM_b

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Phage_lysis (PF03245) 1696 (21.7%) View
PilN (PF05137) 1587 (20.3%) View
HemX (PF04375) 1205 (15.4%) View
T2SM (PF04612) 1099 (14.0%) View
GspL_C (PF12693) 933 (11.9%) View
PilO (PF04350) 807 (10.3%) View
DUF2514 (PF10721) 309 (3.9%) View
T2SM_b (PF10741) 187 (2.4%) View
Total: 8 Total: 7823 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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