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12  structures 5421  species 2  interactions 14609  sequences 157  architectures

Clan: Fer2_BFD (CL0667)

Summary

Bacterioferritin-associated ferredoxin superfamily Add an annotation

This clan includes the Bacterioferritin-associated ferredoxin which is a 2Fe-2S domain. The clan also includes the related Bacterioferritin-associated ferredoxin which lacks the iron sulfur cluster.

This clan contains 2 families and the total number of domains in the clan is 14609. The clan was built by A Bateman.

Literature references

  1. Yao H, Wang Y, Lovell S, Kumar R, Ruvinsky AM, Battaile KP, Vakser IA, Rivera M;, J Am Chem Soc. 2012;134:13470-13481.: The structure of the BfrB-Bfd complex reveals protein-protein interactions enabling iron release from bacterioferritin. PUBMED:22812654 EPMC:22812654
  2. Chen ZW, Hassan-Abdulah A, Zhao G, Jorns MS, Mathews FS;, J Mol Biol. 2006;360:1000-1018.: Heterotetrameric sarcosine oxidase: structure of a diflavin metalloenzyme at 1.85 A resolution. PUBMED:16820168 EPMC:16820168

Members

This clan contains the following 2 member families:

Fer2_BFD SO_alpha_A3

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Fer2_BFD (PF04324) 12534 (85.8%) View
SO_alpha_A3 (PF17806) 2075 (14.2%) View
Total: 2 Total: 14609 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 2 interactions for this clan. More...

Interacting families
A B
Fer2_BFD Fer2_BFD
Ferritin Fer2_BFD

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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