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0  structures 693  species 0  interactions 33518  sequences 1641  architectures

Clan: GAG-polyprotein (CL0523)


LTR-copia-type polyprotein segment Add an annotation

This superfamily is characterised by family members that are derived from retrotransposons of the copia-type.

This clan contains 7 families and the total number of domains in the clan is 33518. The clan was built by P Coggill.


This clan contains the following 7 member families:

DUF1759 DUF4219 DUF4939 PNMA Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

Loading domain graphics...


The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Retrotran_gag_2 (PF14223) 13980 (41.7%) View
Retrotrans_gag (PF03732) 10368 (30.9%) View
DUF1759 (PF03564) 4656 (13.9%) View
Retrotran_gag_3 (PF14244) 1979 (5.9%) View
DUF4219 (PF13961) 1359 (4.1%) View
DUF4939 (PF16297) 605 (1.8%) View
PNMA (PF14893) 571 (1.7%) View
Total: 7 Total: 33518 Clan alignment

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls


This tree shows the occurrence of the domains in this clan across different species. More...