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2994  structures 2951  species 19  interactions 10506  sequences 221  architectures

Clan: Globin (CL0090)

Summary

Globin-like Add an annotation

The globin fold is an evolutionary conserved six helical fold that is found in bacteria and eukaryotes.

This clan contains 7 families and the total number of domains in the clan is 10506. The clan was built by RD Finn.

Members

This clan contains the following 7 member families:

Bac_globin Globin HisK_N Phycobilisome Protoglobin Rsbr_N RsbRD_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Globin (PF00042) 4699 (44.7%) View
Bac_globin (PF01152) 2578 (24.5%) View
Protoglobin (PF11563) 1331 (12.7%) View
Phycobilisome (PF00502) 1219 (11.6%) View
RsbRD_N (PF14361) 517 (4.9%) View
Rsbr_N (PF08678) 101 (1.0%) View
HisK_N (PF09385) 61 (0.6%) View
Total: 7 Total: 10506 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 19 interactions for this clan. More...

Interacting families
A B
AHSP Globin
Bac_globin Bac_globin
FAD_binding_6 Globin
Globin AHSP
FAD_binding_6
Globin
Ldl_recept_a
NAD_binding_1
NEAT
Trypsin
HisK_N HisK_N
MHC_I Globin
NAD_binding_1 Globin
NEAT Globin
Phycobilisome CpcD
Phycobilisome
Phycoerythr_ab Phycobilisome
Protoglobin Protoglobin
Rsbr_N Rsbr_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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