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33  structures 4280  species 4  interactions 7287  sequences 17  architectures

Clan: NusB (CL0633)

Summary

NusB-like superfamily Add an annotation

This clan contains 2 families and the total number of domains in the clan is 7287. The clan was built by A Bateman.

Literature references

  1. Liu J, Yokota H, Kim R, Kim SH; , Proteins. 2004;55:1082-1086.: A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins. PUBMED:15146506 EPMC:15146506

Members

This clan contains the following 2 member families:

DUF1948 NusB

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
NusB (PF01029) 7285 (100.0%) View
DUF1948 (PF09185) 2 (0.0%) View
Total: 2 Total: 7287 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 4 interactions for this clan. More...

Interacting families
A B
NusB Methyltr_RsmB-F
NusB
Ribosomal_S10
Ribosomal_S10 NusB

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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