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56  structures 3341  species 10  interactions 14746  sequences 577  architectures

Clan: PGBD (CL0244)

Summary

PGBD superfamily Add an annotation

This clan consists of small putative peptidoglycan binding domains composed of three alpha helices.

This clan contains 3 families and the total number of domains in the clan is 14746. The clan was built by A Bateman.

Members

This clan contains the following 3 member families:

PG_binding_1 PG_binding_2 PG_binding_3

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
PG_binding_1 (PF01471) 14122 (95.8%) View
PG_binding_3 (PF09374) 489 (3.3%) View
PG_binding_2 (PF08823) 135 (0.9%) View
Total: 3 Total: 14746 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 10 interactions for this clan. More...

Interacting families
A B
Amidase_2 PG_binding_1
fn2 PG_binding_1
Glyco_hydro_108 PG_binding_3
PG_binding_1 fn2
Hemopexin
Peptidase_M10
Peptidase_M15_3
SLT
PG_binding_3 Glyco_hydro_108
PG_binding_3

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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