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38  structures 427  species 5  interactions 2242  sequences 68  architectures

Clan: PHM_PNGase_F (CL0612)

Summary

PHM/PNGase F superfamily Add an annotation

Members of this superfamily adopt a beta-sandwich fold. With two adjacent domains in a protein interacting in the same way as nucleoplasmins that share the same fold. This superfamily includes the Peptide-N-glycosidase F enzymes and the peptidylglycine alpha-hydroxylating monooxygenase enzymes.

This clan contains 4 families and the total number of domains in the clan is 2242. The clan was built by A Bateman.

Members

This clan contains the following 4 member families:

Cu2_monoox_C Cu2_monooxygen N-glycanase_C N-glycanase_N

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Cu2_monoox_C (PF03712) 1050 (46.8%) View
Cu2_monooxygen (PF01082) 912 (40.7%) View
N-glycanase_C (PF09113) 164 (7.3%) View
N-glycanase_N (PF09112) 116 (5.2%) View
Total: 4 Total: 2242 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 5 interactions for this clan. More...

Interacting families
A B
Cu2_monooxygen Cu2_monoox_C
N-glycanase_C N-glycanase_C
N-glycanase_N
N-glycanase_N N-glycanase_C
N-glycanase_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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