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182  structures 20214  species 15  interactions 185482  sequences 5289  architectures

Clan: PP-binding (CL0314)

Summary

ACP-like superfamily Add an annotation

This clan contains 4 families and the total number of domains in the clan is 185482. The clan was built by A Bateman.

Literature references

  1. Byers DM, Gong H; , Biochem Cell Biol. 2007;85:649-662.: Acyl carrier protein: structure-function relationships in a conserved multifunctional protein family. PUBMED:18059524 EPMC:18059524
  2. Leibundgut M, Jenni S, Frick C, Ban N; , Science. 2007;316:288-290.: Structural basis for substrate delivery by acyl carrier protein in the yeast fatty acid synthase. PUBMED:17431182 EPMC:17431182

Members

This clan contains the following 4 member families:

DUF1493 PP-binding PP-binding_2 Ribosomal_L50

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
PP-binding (PF00550) 181816 (98.0%) View
DUF1493 (PF07377) 3291 (1.8%) View
Ribosomal_L50 (PF10501) 344 (0.2%) View
PP-binding_2 (PF14573) 31 (0.0%) View
Total: 4 Total: 185482 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 15 interactions for this clan. More...

Interacting families
A B
Abhydrolase_6 PP-binding
ACPS PP-binding
AMP-binding PP-binding
AMP-binding_C PP-binding
Condensation PP-binding
FA_desaturase_2 PP-binding
PP-binding AMP-binding
AMP-binding_C
Condensation
HxxPF_rpt
p450
PP-binding
Thioesterase
STAS PP-binding
tRNA-synt_2b PP-binding

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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