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148  structures 1953  species 20  interactions 9314  sequences 465  architectures

Clan: PapD-like (CL0556)

Summary

PapD-like superfamily,immunoglobulin-like beta sandwich Add an annotation

This superfamily is characterised by proteins in families involved in ciliary or flagellar function. The families may be acting as chaperones.

This clan contains 6 families and the total number of domains in the clan is 9314. The clan was built by P Coggill.

Members

This clan contains the following 6 member families:

ASH DUF1573 Motile_Sperm PapD-like PapD_N TMEM131_like

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Motile_Sperm (PF00635) 4744 (50.9%) View
DUF1573 (PF07610) 1639 (17.6%) View
PapD_N (PF00345) 1370 (14.7%) View
ASH (PF15780) 787 (8.4%) View
PapD-like (PF14874) 398 (4.3%) View
TMEM131_like (PF12371) 376 (4.0%) View
Total: 6 Total: 9314 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 20 interactions for this clan. More...

Interacting families
A B
Antig_Caf1 PapD_N
Fimbrial PapD_N
Fimbrial_K88 PapD_N
Motile_Sperm Motile_Sperm
PapC_C PapD_N
PapC_N PapD_N
PapD_C PapD_N
PapD_N Antig_Caf1
Fimbrial
Fimbrial_K88
FimH_man-bind
PapC_C
PapC_N
PapD_C
PapD_N
PapG_C
PapG_N
Usher
Saf-Nte_pilin PapD_N
Usher PapD_N

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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