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96  structures 19595  species 22  interactions 20640  sequences 22  architectures

Clan: Ribo_L29 (CL0346)

Summary

Ribosomal protein L29, L29p, superfamily Add an annotation

Superfamily includes Ribosomal protein L29 family and its corresponding mitochondrial ribosomal family, L47.

This clan contains 2 families and the total number of domains in the clan is 20640. The clan was built by P Coggill.

Members

This clan contains the following 2 member families:

MRP-L47 Ribosomal_L29

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Ribosomal_L29 (PF00831) 20051 (97.1%) View
MRP-L47 (PF06984) 589 (2.9%) View
Total: 2 Total: 20640 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 22 interactions for this clan. More...

Interacting families
A B
Ribosomal_L16 Ribosomal_L29
Ribosomal_L23 Ribosomal_L29
Ribosomal_L23eN Ribosomal_L29
Ribosomal_L24e Ribosomal_L29
Ribosomal_L29 KOW
Ribosomal_L18ae
Ribosomal_L18p
Ribosomal_L23
Ribosomal_L29
Ribosomal_L3
Ribosomal_L37ae
Ribosomal_L40e
Ribosomal_L6
Ribosomal_S20p
SRP54_N
Trigger_N
ubiquitin
Ribosomal_L37ae Ribosomal_L29
Ribosomal_L40e Ribosomal_L29
SecE Ribosomal_L29
SecY Ribosomal_L29
SRP54_N Ribosomal_L29

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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