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540  structures 22225  species 102  interactions 342040  sequences 1969  architectures

Clan: Zn_Beta_Ribbon (CL0167)

Summary

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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Alignments

The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
zf-C4_Topoisom (PF01396) 43120 (12.6%) View
zf-FPG_IleRS (PF06827) 35892 (10.5%) View
OrfB_Zn_ribbon (PF07282) 23124 (6.8%) View
zf-CHC2 (PF01807) 20814 (6.1%) View
Ribosomal_L32p (PF01783) 20282 (5.9%) View
zf-dskA_traR (PF01258) 19945 (5.8%) View
zf-ISL3 (PF14690) 15022 (4.4%) View
Zn_ribbon_recom (PF13408) 13280 (3.9%) View
Topo_Zn_Ribbon (PF08272) 9958 (2.9%) View
zf-NADH-PPase (PF09297) 9099 (2.7%) View
Trm112p (PF03966) 8993 (2.6%) View
PhnA_Zn_Ribbon (PF08274) 8400 (2.5%) View
Ogr_Delta (PF04606) 8366 (2.4%) View
zf-DHHC (PF01529) 8153 (2.4%) View
Zn_Tnp_IS1 (PF03811) 7562 (2.2%) View
GATA (PF00320) 6448 (1.9%) View
zf-RanBP (PF00641) 5887 (1.7%) View
DUF2387 (PF09526) 4809 (1.4%) View
DUF35_N (PF12172) 4755 (1.4%) View
Zn-ribbon_8 (PF09723) 4309 (1.3%) View
zinc_ribbon_11 (PF11682) 4164 (1.2%) View
zinc_ribbon_2 (PF13240) 4080 (1.2%) View
Toprim_Crpt (PF13342) 4041 (1.2%) View
DUF1451 (PF07295) 3866 (1.1%) View
zinc-ribbons_6 (PF07191) 3430 (1.0%) View
DZR (PF12773) 3348 (1.0%) View
TFIIS_C (PF01096) 3250 (1.0%) View
Prim_Zn_Ribbon (PF08273) 3091 (0.9%) View
TF_Zn_Ribbon (PF08271) 2524 (0.7%) View
zf-GRF (PF06839) 2450 (0.7%) View
zinc-ribbon_6 (PF10005) 2349 (0.7%) View
Nudix_N_2 (PF14803) 2071 (0.6%) View
zf-ZPR1 (PF03367) 1508 (0.4%) View
RNA_POL_M_15KD (PF02150) 1420 (0.4%) View
zf-TFIIB (PF13453) 1313 (0.4%) View
Ribosomal_S27e (PF01667) 1295 (0.4%) View
continued
Pfam family Num. domains Alignment
DUF4379 (PF14311) 1259 (0.4%) View
zf-ribbon_3 (PF13248) 1249 (0.4%) View
zinc_ribbon_5 (PF13719) 1247 (0.4%) View
Ribosomal_S27 (PF01599) 1201 (0.4%) View
Ribosomal_L37ae (PF01780) 1167 (0.3%) View
Zn_Tnp_IS1595 (PF12760) 1147 (0.3%) View
zf-CSL (PF05207) 1036 (0.3%) View
Spt4 (PF06093) 931 (0.3%) View
NinF (PF05810) 835 (0.2%) View
zinc_ribbon_13 (PF09855) 802 (0.2%) View
zf-trcl (PF13451) 774 (0.2%) View
Lar_restr_allev (PF14354) 771 (0.2%) View
Elf1 (PF05129) 746 (0.2%) View
DNA_RNApol_7kD (PF03604) 709 (0.2%) View
zinc_ribbon_9 (PF14369) 646 (0.2%) View
NOB1_Zn_bind (PF08772) 638 (0.2%) View
Auto_anti-p27 (PF06677) 634 (0.2%) View
zinc_ribbon_10 (PF10058) 576 (0.2%) View
DUF2614 (PF11023) 432 (0.1%) View
UPF0547 (PF10571) 417 (0.1%) View
RRN7 (PF11781) 316 (0.1%) View
Mu-like_Com (PF10122) 282 (0.1%) View
zinc_ribbon_12 (PF11331) 241 (0.1%) View
CpXC (PF14353) 235 (0.1%) View
zinc_ribbon_15 (PF17032) 232 (0.1%) View
DUF2072 (PF09845) 229 (0.1%) View
DUF1610 (PF07754) 228 (0.1%) View
Tnp_zf-ribbon_2 (PF13842) 146 (0.0%) View
A2L_zn_ribbon (PF08792) 134 (0.0%) View
zinc_ribbon_4 (PF13717) 100 (0.0%) View
DUF2116 (PF09889) 100 (0.0%) View
Baculo_LEF5_C (PF11792) 85 (0.0%) View
DUF2180 (PF09947) 73 (0.0%) View
DUF1936 (PF09151) 4 (0.0%) View
Total: 70 Total: 342040 Clan alignment
 

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Family relationships

This diagram shows the relationships between members of this clan. More...

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Species distribution

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This tree shows the occurrence of the domains in this clan across different species. More...

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Interactions

There are 102 interactions for this clan. More...

Interacting families
A B
Anticodon_1 zf-FPG_IleRS
CBS DUF1936
DUF1936 CBS
Fapy_DNA_glyco zf-FPG_IleRS
FmdE zf-dskA_traR
GATA LIM
zf-C2H2_6
H2TH zf-FPG_IleRS
NmrA GATA
NUDIX Nudix_N_2
zf-NADH-PPase
NUDIX-like zf-NADH-PPase
Nudix_N_2 NUDIX
Nudix_N_2
Ras zf-RanBP
Ribosomal_L13 Ribosomal_L37ae
Ribosomal_L17 Ribosomal_L32p
Ribosomal_L18e Ribosomal_L37ae
Ribosomal_L2 Ribosomal_L37ae
Ribosomal_L20 Ribosomal_L32p
Ribosomal_L22 Ribosomal_L32p
Ribosomal_L28e Ribosomal_L37ae
Ribosomal_L29 Ribosomal_L37ae
Ribosomal_L2_C Ribosomal_L37ae
Ribosomal_L3 Ribosomal_L37ae
Ribosomal_L32e Ribosomal_L37ae
Ribosomal_L32p Ribosomal_L1
Ribosomal_L17
Ribosomal_L20
Ribosomal_L22
Ribosomal_L34e Ribosomal_L37ae
Ribosomal_L37ae Ribosomal_L13
Ribosomal_L14
Ribosomal_L2
Ribosomal_L22
Ribosomal_L24e
Ribosomal_L29
Ribosomal_L2_C
Ribosomal_L3
Ribosomal_L30
Ribosomal_L30_N
Ribosomal_L35Ae
Ribosomal_L5
Ribosomal_L7Ae
Ribosomal_L6 Ribosomal_L37ae
Ribosomal_L7Ae Ribosomal_L37ae
Ribosomal_S27
Ribosomal_S11 Ribosomal_S27e
Ribosomal_S13_N Ribosomal_S27e
Ribosomal_S14 Ribosomal_S27
Ribosomal_S15 Ribosomal_S27e
Ribosomal_S27 Ribosomal_L7Ae
Ribosomal_S11
Ribosomal_S25
Ribosomal_S28e
Ribosomal_S7
Ribosomal_S7e
Ribosomal_S9
Ribosomal_S27e Ribosomal_S11
Ribosomal_S13_N
Ribosomal_S26e
Ribosomal_S27e
Ribosomal_S28e Ribosomal_S27
Ribosomal_S3Ae Ribosomal_S27e
Ribosomal_S7 Ribosomal_S27
RNA_pol_A_bac DNA_RNApol_7kD
RNA_pol_Rpb1_1 TF_Zn_Ribbon
RNA_pol_Rpb1_2 TF_Zn_Ribbon
TFIIS_C
RNA_pol_Rpb1_3 TFIIS_C
RNA_pol_Rpb1_4 TFIIS_C
RNA_pol_Rpb1_5 RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb1_6 TFIIS_C
RNA_pol_Rpb1_7 RNA_POL_M_15KD
RNA_pol_Rpb2_1 DNA_RNApol_7kD
RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb2_2 RNA_POL_M_15KD
TFIIS_C
RNA_pol_Rpb2_3 TFIIS_C
RNA_pol_Rpb2_4 TFIIS_C
RNA_pol_Rpb2_5 TFIIS_C
RNA_pol_Rpb2_6 DNA_RNApol_7kD
TF_Zn_Ribbon
TFIIS_C
RNA_pol_Rpb2_7 TF_Zn_Ribbon
Spt4 KOW
Spt5-NGN
Spt5-NGN Spt4
TFIIE_alpha TF_Zn_Ribbon
Topo_Zn_Ribbon Topo_Zn_Ribbon
Trm112p MTS
Trm112p
ubiquitin Ribosomal_S27
zf-RanBP
zf-CHC2 Toprim_N
zf-CHC2
zf-dskA_traR zf-dskA_traR
zf-NADH-PPase NUDIX
NUDIX-like
zf-NADH-PPase

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

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