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492  structures 138  species 7  interactions 305  sequences 14  architectures

Clan: ssDNA_NP_VP (CL0605)


ssDNA viruses Nucleoplasmin-like/VP coat superfamily Add an annotation

According to SCOP this superfamily includes proteins that have a beta sandwich fold with two sheets in a jelly roll topology. Families in this superfamily belong to various ssDNA viruses.

This clan contains 4 families and the total number of domains in the clan is 305. The clan was built by A Bateman.


This clan contains the following 4 member families:

Denso_VP4 Parvo_coat Phage_F Phage_G

External database links

Domain organisation

Below is a listing of the unique domain organisations or architectures from this clan. More...

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The table below shows the number of occurrences of each domain throughout the sequence database. More...

Pfam family Num. domains Alignment
Phage_F (PF02305) 225 (73.8%) View
Phage_G (PF02306) 48 (15.7%) View
Denso_VP4 (PF02336) 20 (6.6%) View
Parvo_coat (PF00740) 12 (3.9%) View
Total: 4 Total: 305 Clan alignment

Please note: Clan alignments can be very large and can cause problems for some browsers. Read the note above before viewing.

Family relationships

This diagram shows the relationships between members of this clan. More...

Species distribution

Tree controls


This tree shows the occurrence of the domains in this clan across different species. More...



There are 7 interactions for this clan. More...

Interacting families
gpD Phage_F
Parvo_coat Parvo_coat
Phage_F Microvir_J


For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the mapping between the Pfam families in this clan, the corresponding UniProt entries, and the region of the three-dimensional structures that are available for that sequence.

Loading structure mapping...