Summary: Small hydrophilic plant seed protein
This is the Wikipedia entry entitled "Plant seed proteins". More...
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Plant seed proteins Edit Wikipedia article
|Small hydrophilic plant seed protein|
Plant seed proteins are small hydrophilic proteins some of which are structurally related. These proteins contain from 83 to 153 amino acid residues and may play a role in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
- Bray EA (1993). "Molecular Responses to Water Deficit". Plant Physiol. 103 (4): 1035–1040. PMC 159086. PMID 12231998.
- Gaubier P, Raynal M, Hull G, Huestis GM, Grellet F, Arenas C, Pages M, Delseny M (1993). "Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation". Mol. Gen. Genet. 238 (3): 409–418. doi:10.1007/bf00292000. PMID 8492809.
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Small hydrophilic plant seed protein Provide feedback
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External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR000389
This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [PUBMED:12231998, PUBMED:8492809] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
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This example describes an architecture with one
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EGFdomains, and finally a single
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Number in seed:||5|
|Number in full:||271|
|Average length of the domain:||71.90 aa|
|Average identity of full alignment:||39 %|
|Average coverage of the sequence by the domain:||87.44 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||12|
|Download:||download the raw HMM for this family|
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