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129  structures 359  species 1  interaction 2837  sequences 61  architectures

Family: Thaumatin (PF00314)

Summary: Thaumatin family

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Thaumatin Edit Wikipedia article

Thaumatin family
Thaumatin I 1RQW.png
Ribbon[1][2] diagram of thaumatin I. From PDB: 1RQW​.
Identifiers
Symbol Thaumatin
Pfam PF00314
InterPro IPR001938
SMART SM00205
PROSITE PDOC00286
SCOP 1thu
SUPERFAMILY 1thu
OPM superfamily 189
OPM protein 1aun
CDD cd09215
Thaumatin I
Identifiers
Symbol THM1_THADA
PDB 1RQW More structures
UniProt P02883
Thaumatin II
Identifiers
Symbol THM2_THADA
UniProt P02884

Thaumatin is a low-calorie sweetener and flavour modifier. The protein is often used primarily for its flavour-modifying properties and not exclusively as a sweetener.[3]

The thaumatins were first found as a mixture of proteins isolated from the katemfe fruit (Thaumatococcus daniellii Bennett) of west Africa. Some proteins in the thaumatin family of sweeteners are roughly 2000 times more potent than sugar. Although very sweet, thaumatin's taste is markedly different from sugar's. The sweetness of thaumatin builds very slowly. Perception lasts a long time, leaving a liquorice-like aftertaste at high usage levels. Thaumatin is highly water-soluble, stable to heating, and stable under acidic conditions.

Biological role

Thaumatin production is induced in katemfe in response to an attack upon the plant by viroid pathogens. Several members of the thaumatin protein family display significant in vitro inhibition of hyphal growth and sporulation by various fungi. The thaumatin protein is considered a prototype for a pathogen-response protein domain. This thaumatin domain has been found in species as diverse as rice and Caenorhabditis elegans. Thaumatins are pathogenesis-related (PR) proteins, which are induced by various agents ranging from ethylene to pathogens, and are structurally diverse and ubiquitous in plants:[4] They include thaumatin, osmotin, tobacco major and minor PR proteins, alpha-amylase/trypsin inhibitor, and P21 and PWIR2 soybean and wheat leaf proteins. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown.[4] Thaumatin is an intensely sweet-tasting protein (on a molar basis about 100,000 times as sweet as sucrose[5]) found in the West African shrub Thaumatococcus daniellii: it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. The thaumatin protein I consists of a single polypeptide chain of 207 residues.

Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix.[4] Tobacco cells exposed to gradually increased salt concentrations develop a greatly increased tolerance to salt, due to the expression of osmotin,[6] a member of the PR protein family. Wheat plants attacked by barley powdery mildew express a PR protein (PWIR2), which results in resistance against that infection.[7] The similarity between this PR protein and other PR proteins to the maize alpha-amylase/trypsin inhibitor has suggested PR proteins may act as some form of inhibitor.[7]

The thaumatin-like proteins isolated from kiwi fruit or apple appear to have their allergenic properties minimally reduced by gastroduodenal digestive processes, but not by heating.[8][9]

Production

Thaumatin crystal (~1 mm long) grown by liquid–liquid diffusion under microgravity conditions in outer space. Arrow marks nucleation point.[10]

Within West Africa, the katemfe fruit has been locally cultivated and used to flavour foods and beverages for some time. The fruit's seeds are encased in a membranous sac, or aril, that is the source of thaumatin. In the 1970s, Tate and Lyle began extracting thaumatin from the fruit. In 1990, researchers at Unilever reported the isolation and sequencing of the two principal proteins found in thaumatin, which they dubbed thaumatin I and thaumatin II. These researchers were also able to express thaumatin in genetically engineered bacteria.

Thaumatin has been approved as a sweetener in the European Union (E957), Israel, and Japan. In the United States, it is generally recognized as safe as a flavouring agent (FEMA GRAS 3732) but not as a sweetener.

Crystallization of thaumatin

Since thaumatin crystallizes rapidly and easily in the presence of tartrate ions, thaumatin-tartrate mixtures are frequently used as model systems to study protein crystallization. Interestingly, the solubility of thaumatin, its crystal habit, and mechanism of crystal formation are dependent upon the chirality of precipitant used. When crystallized with L- tartrate, thaumatin forms bipyramidal crystals and displays a solubility that increases with temperature; with D- and meso-tartrate, it forms stubby and prismatic crystals and displays a solubility that decreases with temperature.[11] This suggests control of precipitant chirality may be an important factor in protein crystallization in general.

See also

References

  1. ^ Stivala A, Wybrow M, Wirth A, Whisstock JC, Stuckey PJ (December 2011). "Automatic generation of protein structure cartoons with Pro-origami". Bioinformatics. 27 (23): 3315–6. doi:10.1093/bioinformatics/btr575. PMID 21994221. 
  2. ^ DeLano Scientific LLC. (2004). Cartoon Representations.
  3. ^ Green C (1999). "Thaumatin: a natural flavour ingredient". World Review of Nutrition and Dietetics. World Review of Nutrition and Dietetics. 85: 129–32. doi:10.1159/000059716. ISBN 3-8055-6938-6. PMID 10647344. 
  4. ^ a b c Ruiz-Medrano R, Jimenez-Moraila B, Herrera-Estrella L, Rivera-Bustamante RF (December 1992). "Nucleotide sequence of an osmotin-like cDNA induced in tomato during viroid infection". Plant Molecular Biology. 20 (6): 1199–202. doi:10.1007/BF00028909. PMID 1463856. 
  5. ^ Edens L, Heslinga L, Klok R, Ledeboer AM, Maat J, Toonen MY, Visser C, Verrips CT (April 1982). "Cloning of cDNA encoding the sweet-tasting plant protein thaumatin and its expression in Escherichia coli". Gene. 18 (1): 1–12. doi:10.1016/0378-1119(82)90050-6. PMID 7049841. 
  6. ^ Singh NK, Nelson DE, Kuhn D, Hasegawa PM, Bressan RA (July 1989). "Molecular Cloning of Osmotin and Regulation of Its Expression by ABA and Adaptation to Low Water Potential". Plant Physiology. 90 (3): 1096–101. doi:10.1104/pp.90.3.1096. PMC 1061849Freely accessible. PMID 16666857. 
  7. ^ a b Mauch F, Hertig C, Rebmann G, Bull J, Dudler R (June 1991). "A wheat glutathione-S-transferase gene with transposon-like sequences in the promoter region". Plant Molecular Biology. 16 (6): 1089–91. doi:10.1007/BF00016083. PMID 1650615. 
  8. ^ Bublin M, Radauer C, Knulst A, Wagner S, Scheiner O, Mackie AR, Mills EN, Breiteneder H (October 2008). "Effects of gastrointestinal digestion and heating on the allergenicity of the kiwi allergens Act d 1, actinidin, and Act d 2, a thaumatin-like protein". Molecular Nutrition & Food Research. 52 (10): 1130–9. doi:10.1002/mnfr.200700167. PMID 18655003. 
  9. ^ Smole U, Bublin M, Radauer C, Ebner C, Breiteneder H (2008). "Mal d 2, the thaumatin-like allergen from apple, is highly resistant to gastrointestinal digestion and thermal processing". International Archives of Allergy and Immunology. 147 (4): 289–98. doi:10.1159/000144036. PMID 18617748. 
  10. ^ McPherson A, Delucas LJ (2015). "Microgravity protein crystallization". Npj Microgravity. 1: 15010. doi:10.1038/npjmgrav.2015.10. 
  11. ^ Asherie N, Ginsberg C, Greenbaum A, Blass S, Knafo S (2008). "Effects of Protein Purity and Precipitant Stereochemistry on the Crystallization of Thaumatin". Crystal Growth & Design. 8 (12): 4200. doi:10.1021/cg800616q. 

Further reading

  • Higginbotham JD (1986). Gelardi RC, Nabors LO, eds. Alternative sweeteners. New York: M. Dekker, Inc. ISBN 0-8247-7491-4. 
  • Higginbotham J, Witty M (1994). Thaumatin. Boca Raton: CRC Press. ISBN 0-8493-5196-0. 

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Literature references

  1. Petre B, Major I, Rouhier N, Duplessis S;, BMC Plant Biol. 2011;11:33.: Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. PUBMED:21324123 EPMC:21324123


Internal database links

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR001938

Thaumatin [PUBMED:7049841] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [PUBMED:7049841] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein.

Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix [PUBMED:7049841]. Several stress-induced proteins of plants have been found to be related to thaumatins:

  • A maize alpha-amylase/trypsin inhibitor
  • Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses
  • Salt-induced protein NP24 from tomato
  • Osmotin, a salt-induced protein from tobacco
  • [PUBMED:16666857]
  • Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [PUBMED:7630973]
  • P21, a leaf protein from soybean
  • PWIR2, a leaf protein from wheat [PUBMED:1650615]
  • Zeamatin, a maize antifunal protein [PUBMED:7846159]

This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity [PUBMED:1463856]. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [PUBMED:1463856].

Domain organisation

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Pfam Clan

This family is a member of clan CDC (CL0293), which has the following description:

This superfamily includes the MACPF domain as well as the Cholesterol-dependent cytolysins [1].

The clan contains the following 7 members:

Aegerolysin Anemone_cytotox FB_lectin MACPF TDH Thaumatin Thiol_cytolysin

Alignments

We store a range of different sequence alignments for families. As well as the seed alignment from which the family is built, we provide the full alignment, generated by searching the sequence database (reference proteomes) using the family HMM. We also generate alignments using four representative proteomes (RP) sets, the UniProtKB sequence database, the NCBI sequence database, and our metagenomics sequence database. More...

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  Seed
(304)
Full
(2837)
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(4147)
NCBI
(5460)
Meta
(8)
RP15
(379)
RP35
(1581)
RP55
(2516)
RP75
(2913)
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  Seed
(304)
Full
(2837)
Representative proteomes UniProt
(4147)
NCBI
(5460)
Meta
(8)
RP15
(379)
RP35
(1581)
RP55
(2516)
RP75
(2913)
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  Seed
(304)
Full
(2837)
Representative proteomes UniProt
(4147)
NCBI
(5460)
Meta
(8)
RP15
(379)
RP35
(1581)
RP55
(2516)
RP75
(2913)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download   Download   Download  
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This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

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Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Prosite
Previous IDs: thaumatin;
Type: Domain
Author: Finn RD
Number in seed: 304
Number in full: 2837
Average length of the domain: 188.10 aa
Average identity of full alignment: 38 %
Average coverage of the sequence by the domain: 67.40 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 26740544 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 27.4 27.4
Trusted cut-off 27.5 27.4
Noise cut-off 27.2 27.3
Model length: 217
Family (HMM) version: 16
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Species distribution

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Archea Archea Eukaryota Eukaryota
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Viroids Viroids Unclassified sequence Unclassified sequence

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Interactions

There is 1 interaction for this family. More...

Thaumatin

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Thaumatin domain has been found. There are 129 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.

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