Summary: Small hydrophilic plant seed protein
This is the Wikipedia entry entitled "Plant seed proteins". More...
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Plant seed proteins Edit Wikipedia article
|Small hydrophilic plant seed protein|
Plant seed proteins are small hydrophilic proteins some of which are structurally related. These proteins contain from 83 to 153 amino acid residues and may play a role in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
- Bray EA (1993). "Molecular Responses to Water Deficit". Plant Physiol. 103 (4): 1035–1040. doi:10.1104/pp.103.4.1035. PMC 159086. PMID 12231998.
- Gaubier P, Raynal M, Hull G, Huestis GM, Grellet F, Arenas C, Pages M, Delseny M (1993). "Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation". Mol. Gen. Genet. 238 (3): 409–418. doi:10.1007/bf00292000. PMID 8492809.
This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.
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This tab holds annotation information from the InterPro database.
InterPro entry IPR000389
This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [PUBMED:12231998, PUBMED:8492809] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Number in seed:||4|
|Number in full:||205|
|Average length of the domain:||62.10 aa|
|Average identity of full alignment:||35 %|
|Average coverage of the sequence by the domain:||82.09 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 11927849 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||14|
|Download:||download the raw HMM for this family|
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