# STOCKHOLM 1.0 #=GF ID Ribosomal_L13 #=GF AC PF00572.19 #=GF DE Ribosomal protein L13 #=GF PI L13; #=GF AU Bateman A;0000-0002-6982-4660 #=GF SE Prosite #=GF GA 19.50 19.50; #=GF TC 19.50 19.60; #=GF NC 19.40 19.40; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF DR INTERPRO; IPR005822; #=GF DR PROSITE; PDOC00625; #=GF DR SCOP; 1m90; fa; #=GF DR SO; 0100021; polypeptide_conserved_region; #=GF SQ 55 #=GS D2QXQ9_PIRSD/16-133 AC D2QXQ9.1 #=GS A0A0W1R5T6_9EURY/7-110 AC A0A0W1R5T6.1 #=GS A0A1M2YG60_9ARCH/8-115 AC A0A1M2YG60.1 #=GS I3TDW9_THEC1/10-118 AC I3TDW9.1 #=GS A9A5C3_NITMS/11-119 AC A9A5C3.1 #=GS R0KWS4_NOSB1/2-109 AC R0KWS4.1 #=GS A0A2H3XV24_PHODC/9-116 AC A0A2H3XV24.1 #=GS A0A196SFJ5_BLAHN/3-110 AC A0A196SFJ5.1 #=GS F4Q9I5_CAVFA/23-130 AC F4Q9I5.1 #=GS A0E2R4_PARTE/3-110 AC A0E2R4.1 #=GS H8Z9K5_NEMS1/4-111 AC H8Z9K5.1 #=GS S6A5A1_9CREN/5-114 AC S6A5A1.1 #=GS G4R6J0_PELHB/13-132 AC G4R6J0.1 #=GS D1Y8G6_9BACT/16-133 AC D1Y8G6.1 #=GS A0A1H4C0G4_9BACT/18-136 AC A0A1H4C0G4.1 #=GS F5YNK2_TREPZ/13-131 AC F5YNK2.1 #=GS A0A1Y4ITI6_9FIRM/13-131 AC A0A1Y4ITI6.1 #=GS A0A0S4PLQ5_9BACT/14-131 AC A0A0S4PLQ5.1 #=GS A0A1B9E4N5_9FLAO/18-136 AC A0A1B9E4N5.1 #=GS A0A0D3VD18_9BACL/14-132 AC A0A0D3VD18.1 #=GS A0A0J7KHS4_9BACT/13-131 AC A0A0J7KHS4.1 #=GS I4B462_TURPD/19-137 AC I4B462.1 #=GS A0T0Z5_THAPS/14-126 AC A0T0Z5.1 #=GS A0T0K1_PHATC/17-130 AC A0T0K1.1 #=GS E0TIQ8_ZINIC/13-130 AC E0TIQ8.1 #=GS J9Z170_9PROT/13-133 AC J9Z170.1 #=GS A0A1Y2CYG9_9FUNG/10-128 AC A0A1Y2CYG9.1 #=GS A0DHW6_PARTE/83-203 AC A0DHW6.1 #=GS W7X626_TETTS/94-213 AC W7X626.1 #=GS L1JA35_GUITC/24-143 AC L1JA35.1 #=GS M2XDA8_GALSU/16-134 AC M2XDA8.1 #=GS D2UZL4_NAEGR/9-131 AC D2UZL4.1 #=GS A0A1X7VF42_AMPQE/18-136 AC A0A1X7VF42.1 #=GS A0A0D2VWB5_CAPO3/111-229 AC A0A0D2VWB5.1 #=GS H0V6B0_CAVPO/16-134 AC H0V6B0.2 #=GS A0A0V1DB44_TRIBR/924-1045 AC A0A0V1DB44.1 #=GS B4JB54_DROGR/15-133 AC B4JB54.1 #=GS T1FYD8_HELRO/25-143 AC T1FYD8.1 #=GS B7G694_PHATC/10-131 AC B7G694.1 #=GS A0A0L0DCB9_THETB/14-132 AC A0A0L0DCB9.1 #=GS A0A0E0PJG0_ORYRU/49-167 AC A0A0E0PJG0.1 #=GS A0A0C3BYB8_9AGAM/14-131 AC A0A0C3BYB8.1 #=GS M7P9P2_PNEMU/14-132 AC M7P9P2.1 #=GS W1QCJ7_OGAPD/14-135 AC W1QCJ7.1 #=GS A0A1R3RZ34_ASPC5/14-135 AC A0A1R3RZ34.1 #=GS Q6C9L9_YARLI/14-135 AC Q6C9L9.2 #=GS R1FFE3_EMIHU/7-125 AC R1FFE3.1 #=GS D4G7J9_RIEPU/4-122 AC D4G7J9.1 #=GS A0A0F0CU43_9BACT/16-134 AC A0A0F0CU43.1 #=GS B2KEZ7_ELUMP/16-134 AC B2KEZ7.1 #=GS A0A1T4Y846_9BACT/13-131 AC A0A1T4Y846.1 #=GS A0A251SE11_HELAN/93-211 AC A0A251SE11.1 #=GS A0A087EBV3_9BIFI/13-130 AC A0A087EBV3.1 #=GS D8K189_DEHLB/13-131 AC D8K189.1 #=GS A0A0M2USU6_9BACT/13-131 AC A0A0M2USU6.1 D2QXQ9_PIRSD/16-133 EKWFVVD..ASDKVVGRLASDIAMILMGKHRPTYTPH.V..LTGDCVIVINAEKVVFTGKKWS.QKEYS.....WFT.GYTRQRRESAES.RLAS.......HPD.QILREAVRRMLPK.NKLA..FKML......QRLKVYTGTEHP A0A0W1R5T6_9EURY/7-110 EADVIVD..ARDCIMGRVASEVAQRA...............LDGERVAVINAERAVITGRDED.VMGVY.....RKR.TEVGSDRGPYYP.KR..........PD.RIFKRAIRGMVPY.KTPH.GREAF......ENVRVYVDNPYD A0A1M2YG60_9ARCH/8-115 EKCLVYD..ADGQVLGRIASMIAKNL...............LEGNDVAVVNAEKAIISGKRKP.MAAKY.....RTR.LNLQEKENPEHS.PYWS......RRPD.MLFKRIVRGMLPY.RRPR.GKEAF......RKLRVFMGEPEA I3TDW9_THEC1/10-118 DKVLVVD..ASGLILGRMASIIAKKL...............LEGYKVYVVNAEKAVLSGEGRRVVEGYK.....LLL.NVRTHYNPEKSG.IRRP......RTPV.GIVKRAVRGMLPM.DKPK.GRLAF......RNLRVFVGLPKE A9A5C3_NITMS/11-119 DRPIVVD..ATNHIAGRLSSNVAKLL...............KQGHRVSIVNCEKIMYSGTRSNLIKEYR.....EFL..EINSIINPKHG.PVHY......RRPD.TIITKMIRQMLPYDRKPS.GKESI......KRLRAYIGSPKE R0KWS4_NOSB1/2-109 HKHLIVD..ASEHVMGKLASKVAKLL...............LEGHKITVLNCEKVILTGSLKS.RLAMF.....KSF.LNKRCRVNPRRG.PFHH......ILPS.MRFYRTVRGMIPY.KSYK.GKTAI......SNLAVHEGIPVE A0A2H3XV24_PHODC/9-116 AKRVLVD..ARHHMLGRLASIVAKEL...............LNGQRVVVVRCEEICLSGGLVR.QKMKY.....LRF.LRKRMNTKPSHG.PIHF......RAPA.KILWRTIRGMIPH.KTKR.GAAAL......ARLKAYDGVPPP A0A196SFJ5_BLAHN/3-110 EKEVVID..CRGHTMGRLASIVAKEL...............LSGQKVVCVRCEDLNVTGS.MM.RNFIR.....RKA.FFHKKMNTNPARGAYHE......RAPS.KIFQRTVRGMVPH.KLPR.GGEAL......SRLRCFEGCPAP F4Q9I5_CAVFA/23-130 LTTIVVD..ANGHLLGRLAAKVAKEL...............LSGQKVTVVRCEGILISGP.MR.RNLLK.....WDA......FMNLTMN.TNHARGPRHYRTPS.MMFWRTVRGMLPH.KTFR.GALAL......RRFKVFEGIPAP A0E2R4_PARTE/3-110 EKEIVID..GKGHLLGRLASYIAKEL...............QRGQRIVVVRTELIQQSGSLFR.NRVIF.....EEY.LNKRMAFNPRRG.YKHY......RTPS.RCFWKVVRGMLQY.KSKR.GAAAL......ERLKIFEGVPPP H8Z9K5_NEMS1/4-111 GTKLVID..AKDHIVGRLAAYVAKSL...............REGYSVVVVRSEGLIFSSPIER.MVSIY.....KDK.KRKRCLVNPKKG.PFHY......KEPS.KCFKRIVRGMLKY.KGAQ.GAADF......ARLKTYDGIPME S6A5A1_9CREN/5-114 EKVIVID..GAGHIAGRLASVIAKEL...............LKGEKIVVVNAEKIILTGKPQRVVEKYSKRWVEWKT.YYNPDMRGPKYP.KT..........PD.RLFKRMVRGMLPK.EKAM.GREAL......KRLYVYIGTPSE G4R6J0_PELHB/13-132 KKWVLID..AEGLVVGRLAAVIATRLRGKHLPTFTPN.Q..DMGDNVIVINADKVKFTGKKLD.DKRFY.....WHT.GYPGGIKDRTMR.ELLE.....GRFPE.RVVENAVRRMMPG.GPLT..RAQL......KNLRVYAGAEHP D1Y8G6_9BACT/16-133 RNWFLID..ATGVPAGRLASRVALILTGKNKPIYTPH.V..DTGDFVVIINADKVGLTGNKLE.TSKVH.....SYS.GFPGGFKEMTYG.EAMK......RSSV.RLLERIIKGMLPK..HNH..LNFG......RKLKVYAGANHP A0A1H4C0G4_9BACT/18-136 RQWHIVD..GTNQTVGRISAKIAAILRGKHKASYTPH.V..DTGDYVIIINADKVTFSGNKLD.QKTYI.....NFS.GYPGGKKEEVAK.DLLK......RRPE.VVLERAIKGMLPK.NKLG..RKMI......KKLFVYAGETHP F5YNK2_TREPZ/13-131 RKWFVID..ASGKVLGRVAARAASIVRGKEKAVFAPH.Q..EVGDFVVVINAEKLVLTGRKVQ.NKLYH.....HHS.GYVGGLKTVTYE.KLAA......RHPT.SPLELAIKGMLPK.GPLG..RKLW......KNVKVYAGSEHP A0A1Y4ITI6_9FIRM/13-131 RKWYVID..AAGKPLGRVAAQAAVLLRGKNKVTFTPN.V..DCGDHVIVINCDQAVLTGKKLE.KKYYR.....THS.GWVGGLKEIQYK.TLMA......ENSD.KAMYVAIKGMIPS.NTLG..AKAM......TRLRCYKGAQHE A0A0S4PLQ5_9BACT/14-131 RTWWVID..AAGKPAGRVAAQVARLLQGKHKPIYTPH.M..DVGDHVIVLNADKVVFTGKKTQ.EVLYH......HT.MHPGGLRAYTRE.KLMT......EKPE.KMMRRVISGMLPK.NKLR..ARML......KRLRIFAGSEHV A0A1B9E4N5_9FLAO/18-136 KEWIVVD..ADGHNLGRLASKVAMILRGKYKPSYTPH.V..DCGDNVIVINSEKINLTGNKMD.EKIYM.....RHT.GYPGGQRTLTAK.VLQA......KNPA.LLVEKAVKGMLPK.NKIG..AELF......RNLNVVVGSEHK A0A0D3VD18_9BACL/14-132 RNWHIVD..AEGKTLGRLATEVAALIRGKHKPQFTTH.V..DTGDFVVVINAEKIYLTGNKLK.DKKYY.....RHS.MHTGGLKITSAG.DMLK......TKPE.RVIEAAVNGMLPK.TRMG..NSMK......LRLKVYAGTDHP A0A0J7KHS4_9BACT/13-131 REWYVIN..AADQTLGRLASEAARVLMGKNKVAYSPN.Q..DHGDNLIIINADKVKLTGKKAD.TKEYF.....RHS.RYPGGGKTRSFK.EQIA......QDST.KVITHAVRGMLSK.NVLG..RSIM......RKLHVYSGTTHP I4B462_TURPD/19-137 HKWVVVD..AKDAILGRVSTKIASLLMGKNKTNYQPG.Q..LVGDHVVVINASQVKVSGNKEA.EKEYI.....WHS.RYYGGMKTRSYK.KQME......IAPD.QAVLLTVKGMLPK.TKYG..RKLL......TRVRVFAGAEHN A0T0Z5_THAPS/14-126 RKWYVID..CKDRQLGRLASTIVPLLTGKSKPIYHPS.V..DVGDYVILINTEYLKLDRE....IERFH.........VFEPGRPGSSLK.RLVN......VAPK.RIIESCVFNMLPN.GFPK..KHLV......KRLKVYQGTEHP A0T0K1_PHATC/17-130 RNWFIID..CKNQKLGRLATIIVSLLKGKTKPHYYPS.I..DIGDYVILLNADSIIINEN....SKHYI.....VNK.PGKPGSSLK.IK.NVSD......CLPK.FTIERAVKGMLSE.T.ET..KRLM......RRLNIYSESSHP E0TIQ8_ZINIC/13-130 DKWLLID..AKDKILGKLANKVSSIIINKNK.KLNFN.I..NNNNFIIIINSDKIKVTGKKNI.NKKYY.....YHT.NFPGGLKVINFN.DLKK......KNSN.LVIRKAILGMLPK.NILK..NKII......NNIKIYKNNIYN J9Z170_9PROT/13-133 KEWHVLD..ATDISVGRLASRVSLILKGKNKPQFSPN.L..PVGDGVIIVNTDKVKFSGNKNS.EKKYY.....KHT.GHPGGIKEITPD.KLKE.....KNKSE.DIIKKAIKGMLPN.SPLF..RDLM.....KNNLKLYKDSNHP A0A1Y2CYG9_9FUNG/10-128 RVWHLVD..ARDRTLGTLAQRISIALRGKYKPTWHPS.D..DVGDYVVVINARHLKLTGKKDS.DKQYF.....WHS.RWIGGLTQISHD.DFKA......EHPN.GPLKKAIYGMLPK.NNLR..RVHF......DRLRVFADADHP A0DHW6_PARTE/83-203 ITYHLFD..ASRFPYGKMCSKIAYHLSGKHKPTFRNN.EPGKVTDKFIIVNGCNMYLTGKKIN.YKVLT.....YHT.GYIGNLKQIKFR.DLIL......QKPE.QLVAWTVSKMLPN.TVYR..MDKL......DHIHLFRGRFHT W7X626_TETTS/94-213 QMYHIFD..ASKMPLGRMCQKIAFFLQGKHRPTFKNCDQ..VTYDNIIVVNAANIMLTGKKAL.LKTVK.....YHT.GFVGGLKEKSYK.FFLT......EKPE.QLVFYCISKMLPK.NLKR..RDLL......KKVEIYRDFQHE L1JA35_GUITC/24-143 RRWWIMD..ARDYTLGKLASLACRLIMGKHKPIFDRS.L..VLGDFVIVTNAPEINVARKSQD.TKLYR.....YHTAGYPGGLVETPYM.KMLK......EKPE.EVIRRAISGMLPK.NNLR..KERM......KLLRVFRTSEHP M2XDA8_GALSU/16-134 KIWRLVD..AKGEILGRVGNIVAHLLQGKHKPYYDRS.V..LCGDPVVVINARYVELTGRKWK.TRVYK.....KHS.GYPGGLNEFPAK.ELIK......EKPE.ELIYETVRHMLPK.NNLG..TEML......GILRVYPEKEHL D2UZL4_NAEGR/9-131 KLFYLID..AKNQIAGRLASKIVPILMGKHKPIYSPH.LGQECGDHVVIVNAKHVALTGDKWK.RKMYR.....WHT.GYAGGLKEYTAE.QRHE......RFPT.YVLETAIKRMLPKSNSTT.RKLKM......SRVHIFPEDVHT A0A1X7VF42_AMPQE/18-136 KLWYLID..AKDQVVGRLAVMVSLILQGKTKPIYHSS.V..DTGDYVVIINTRKVVFTGQKWN.KKLYR.....HHT.GYPGGLKEILSK.DVHK......KDPT.KVLYKAINGCLPK.NGMR..LKRM......NRLYLFPDEEHP A0A0D2VWB5_CAPO3/111-229 ERWFVVD..AQGQPAGRLANLLVQVLQGKHKPIYHHS.T..LCGDHIVVINTKHVALSGTKWL.EKVYR.....RHS.GRPGGMKEEIAR.DYHA......RRPT.EIIRRAVKNMLPR.NNLR..KRYL......NRLHLYVDTAHP H0V6B0_CAVPO/16-134 RMWYLLD..GKMQPPGKLAAVASNRLQGLHKPVYHQT.S..DCGDHVVIMNTRHIAFSGNKWE.QKVYS.....SHT.GYPGGFRQVTAK.QLHL......RDPV.AIVKLAVYGMLPK.NLHR..RTMM......QRLHLFPDEDVP A0A0V1DB44_TRIBR/924-1045 RQWHIIN..AEWQDPILLAGKVAHYLRGMNKPIFHHA.S..DCGDHVIVYNCRHIAMWAFDWK.RLDYY.....FDN.RYLRGQSNIPAY.EIHQ......VDPC.RIVFMEVYRALGGPHDLGTKRRNI......ERLHVFADKDVP B4JB54_DROGR/15-133 RTWHIYD..CTWQNPFESASLVKTHLMGLHKPIYHPM.N..DCGDHVVLINTKEIALPGDEWV.KRVYF.....HHT.GYPGGASWTLAW.QLHE......KDPT.MVMKKAVYNSMAG.NLQR..RHTM......QRLHLFHDDQVP T1FYD8_HELRO/25-143 RLWWLYD..LKWQCPFKSAKVIVRHLEGKHKPIYHPL.S..DIGDHVVVINTQHMAMEGELWR.TFKLF.....HHT.GYPGGFSATRAY.KVHN......EDPT.KLIRKIIYSNIKG.TLLR..RPMM......EKLYLYKDENIP B7G694_PHATC/10-131 RCWHLVD..AKDQIVGRLASQVAAILRGKHKPTFKLN.K..DMGDTVVIVNADKVNFTGKKWK.DKLYR.....WHT.GYPGGLKERPAQ.AMLE......RNPT.MILRKAILGMLMG....R..QKKLIHGFIEPRLKIYAGSSHP A0A0L0DCB9_THETB/14-132 KRWHVVD..ASGESLGRMAVKVARLLSGKDKPTYHAS.Q..TPGDYVLVLNARHLALSDKKLD.SKEYV.....WHT.QYAGGLKKATMR.TVFD......AAPD.DVVRKAVLGMLPK.TKDR..KRFN......RSLFVFPDDVHP A0A0E0PJG0_ORYRU/49-167 LRWRVFD..AKGQVLGRLASQIAVVLQGKDKPTYAPH.V..ENGDMCVVLNAKDISVTGRKMT.DKIYY.....WHT.GYIGHLKERRLK.DQME......KDPT.EVIRKAVMRMLPR.NRLR..DDRD......RKLRIFSGNEHP A0A0C3BYB8_9AGAM/14-131 RVWHKVD..ATDRIVGKLAERIAIVLMGKHKPIYDKS.V..DCGDYVVVSNASKVKVSGLKEK.QLVYR.....KHS.MYPGGLKETPYE.RMMA......TKPW.EIIRHAVSGMLPK.NKMR..ERRL......ERLKIFVG.PRP M7P9P2_PNEMU/14-132 RLWHQIS..AKNCILGRLASTLACLLMGKHKPIYHPA.A..DVGDYVIVTNCALLRLDTRKL..NRTYV.....RHT.GRPGGLKKWTMK.QWIE......REGASAVLRHAVSRMLPK.NRLR..DRRL......DRLKCFEGESHP W1QCJ7_OGAPD/14-135 RVWHHVDLAEDKRTLGRLASQIAVTLIGKHKPIPHET.Q..DAGDYVVVSNAQFLRVTGNKLN.DKTYW.....SHS.TRPGSGKATPMK.KIIK......DYGYGEVIKRAVSKMLPK.NKHR..WTRL......NRLKVYDGSDHP A0A1R3RZ34_ASPC5/14-135 RTWHYVDIGSDPRSLGRVASSIALTLMGKNKPIYDPS.T..DCGDYVVAVGCHDLRVTGKKRQ.QKKYY.....THN.TRPGSLRSMTMD.KMFE......KWGGGEVLRRAVRGMLPK.NRLR..DKRL......ARLKTFEGLAHP Q6C9L9_YARLI/14-135 RTWHFVDVAKEQRTLGRLATSIAQTLQGKHKPVYNTG.H..DCGDYVVVVNADKLRFSGSKLQ.QKEYF.....VQS.SQPGHSHHVAVK.RVIE......NQGVSEVLRRTVAGMLPR.NKLK..RGRI......ARLKVFEGTEHP R1FFE3_EMIHU/7-125 RAWHQVD..GYGQVCGRLASKLVPLLCGKHKPTYQPQ.R..DMGDYVVVTNVAKTVHTGKALD.QKRYY.....RHS.GYAGGLSYVTLR.QLIA......SNPL.EPLRRAVYGMLPK.NKLR..EQRM......RRLRLYPGAEHS D4G7J9_RIEPU/4-122 RNWYIFD..VNGKILGRIASCITRYLIGKHKSDYAPY.L..DIGDYVIVINASKILVTGNKKI.SKKYY.....RHT.GYIGGIKEITFR.DLID......RYPE.RVIKHAVKGMLPK.NKLG..KRMY......LRMKVYSGSNHR A0A0F0CU43_9BACT/16-134 HDWYLID..AEGKTLGRLATKIAALIRGKHLVDYSPH.V..DMGAGVIVINCGKVKVTGNKLN.DKIYT.....TYS.GYPSGLKETSMK.KILD......RKPK.YILRHAVRGMLGQ.NRLT..VLRL......RRLKLYEDAQHP B2KEZ7_ELUMP/16-134 RQWHHID..AAGKTLGRLSTQIAVLLMGKHKKTFTPH.M..DCGDFVVVTNVGQIKVTGNKAE.QKVYF.....SHS.GYAKGGKETPFK.RQFE......KDPT.VVLELAVKRMLDS.NKLR..APRL......KRLRLFASEEHS A0A1T4Y846_9BACT/13-131 RQWWVID..AKDKVLGQVAVAAANLIRGKTRPTFTPH.V..DTGDFVVVINADKVRVTGKKEQ.QKVYT.....SKK.GYIGNQKVETVE.KVRQ......RRPE.LLVHRAVKGMVPH.NRLG..NAIV......TKLKVYAGDEHP A0A251SE11_HELAN/93-211 KTWYVVD..ATDLILGRLASTIAIHIRGKNLATYTPS.V..DMGAFVIVVNAEKVAVSGKKRT.QKLYR.....RHS.GRPGGMKVETFD.QLQQ......RIPE.RIIEHAVRGMLPK.GRLG..RDLF......THLKVYTGPDHP A0A087EBV3_9BIFI/13-130 HDWYVID..ATDVVLGRLATQAATLLRGKNKPTFAPH.A..DSGNHVIIVNAAKIALTGNKLG.KELYM......HS.GRPGGLRSDNYG.DLLQ......RNPE.RIVTTAIKGMLPK.NRLS..KVQL......DRLHVFAGAEHP D8K189_DEHLB/13-131 REWHVID..AKGKVLGQVATDAARLLMGKHKPIFCRH.L..DTGDGVIIVNAAAIEFSGKKGT.DKMYY.....RHS.GYPGGFRKASLN.EMMA......KKPT.FALERAIRGMLPR.NRLG..AAMF......GKLRVYAGAEHP A0A0M2USU6_9BACT/13-131 RDWFIVD..AEDKILGRMLTTVSRVLQGKHKPEYTPH.V..DVGDFVIITNASKVKLTGKKMQ.EKIHY.....YVT.GFQGGLRKRMVG.KTLE......TAPE.KVFSRSVRRMLPR.SRLG..KAML......KKLKIYAGAEHP #=GC seq_cons +pWallD..ApspslGRLAoplAplL.GKpKPhapsp....-sGDhVlVlNuc+ltloGpKhp.pKhYh.....hHo.sasGGh+phshc.chhp......cpPs.pllc+AV+GMLP+.sphp..cphh......p+L+lasGspHP //