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220  structures 380  species 1  interaction 880  sequences 3  architectures

Family: Uricase (PF01014)

Summary: Uricase

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This is the Wikipedia entry entitled "Urate oxidase". More...

Urate oxidase Edit Wikipedia article

Urate oxidase, pseudogene
Identifiers
Symbols UOX; UOXP; URICASE
External IDs OMIM191540 HomoloGene7584 GeneCards: UOX Gene
EC number 1.7.3.3
Orthologs
Species Human Mouse
Entrez 391051 22262
Ensembl ENSG00000240520 ENSMUSG00000028186
UniProt n/a P25688
RefSeq (mRNA) NR_003927 NM_009474
RefSeq (protein) n/a NP_033500
Location (UCSC) Chr 1:
84.83 – 84.86 Mb
Chr 3:
146.25 – 146.3 Mb
PubMed search [1] [2]

The enzyme urate oxidase (UO), or uricase or factor-independent urate hydroxylase, absent in humans, catalyzes the oxidation of uric acid to 5-hydroxyisourate:[1]

Uric acid + O2 + H2O → 5-hydroxyisourate + H2O2allantoin + CO2

Structure[edit]

Urate oxidase is mainly localised in the liver, where it forms a large electron-dense paracrystalline core in many peroxisomes.[2] The enzyme exists as a tetramer of identical subunits, each containing a possible type 2 copper-binding site.[3]

Urate oxidase is a homotetrameric enzyme containing four identical active sites situated at the interfaces between its four subunits. UO from A. flavus is made up of 301 residues and has a molecular weight of 33438 dalton. It is unique among the oxidases in that it does not require a metal atom or an organic co-factor for catalysis. Sequence analysis of several organisms has determined that there are 24 amino acids which are conserved, and of these, 15 are involved with the active site.

factor-independent urate hydroxylase
Identifiers
EC number 1.7.3.3
CAS number 9002-12-4
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum
Gene Ontology AmiGO / EGO
Uricase
Identifiers
Symbol Uricase
Pfam PF01014
InterPro IPR002042
PROSITE PDOC00315
SCOP 1uox
SUPERFAMILY 1uox

Significance of absence in humans[edit]

Humans do have a gene for urate oxidase, but it is nonfunctional. Thus uric acid is the end product of catabolism of purines in humans. Excessive concentration of uric acid in the blood stream leads to gout.

Urate oxidase is found in all organisms, from bacteria to mammals, and plays different metabolic roles, depending on its host organism. It was lost in early primate evolution,[3] and so is absent in humans.

It has been proposed that the loss of urate oxidase protein expression has been advantageous to hominids, since uric acid is a powerful antioxidant and scavenger of singlet oxygen and radicals.[4] Its presence provides the body with protection from oxidative damage, thus prolonging life and decreasing age-specific cancer rates. However, this is highly unlikely as proteins are capable of being activated only when concentrations exceed a certain amount. Adequate uric acid levels could still be maintained to protect the body while preventing evolutionarily disadvantageous conditions like gout.[dubious ]

Urate oxidase is formulated as a protein drug (rasburicase) for the treatment of acute hyperuricemia in patients receiving chemotherapy. A PEGylated form of urate oxidase is in clinical development for treatment of chronic hyperuricemia in patients with "treatment-failure gout".

In legumes[edit]

UO is also an essential enzyme in the ureide pathway, where nitrogen fixation occurs in the root nodules of legumes. The fixed nitrogen is converted to metabolites that are transported from the roots throughout the plant to provide the needed nitrogen for amino acid biosynthesis.

In legumes, 2 forms of uricase are found: in the roots, the tetrameric form; and, in the uninfected cells of root nodules, a monomeric form, which plays an important role in nitrogen-fixation.[5]

References[edit]

  1. ^ Motojima K, Goto S, Kanaya S (1988). "Cloning and sequence analysis of cDNA for rat liver uricase". J. Biol. Chem. 263 (32): 16677–16681. PMID 3182808. 
  2. ^ Motojima K, Goto S (1990). "Organization of rat uricase chromosomal gene differs greatly from that of the corresponding plant gene". FEBS Lett. 264 (1): 156–158. doi:10.1016/0014-5793(90)80789-L. PMID 2338140. 
  3. ^ a b Lee CC, Caskey CT, Wu XW, Muzny DM (1989). "Urate oxidase: primary structure and evolutionary implications". Proc. Natl. Acad. Sci. U.S.A. 86 (23): 9412–9416. doi:10.1073/pnas.86.23.9412. PMC 298506. PMID 2594778. 
  4. ^ Ames BN, Cathcart R, Schwiers E, Hochstein P (November 1981). "Uric acid provides an antioxidant defense in humans against oxidant- and radical-caused aging and cancer: a hypothesis". Proc. Natl. Acad. Sci. U.S.A. 78 (11): 6858–62. doi:10.1073/pnas.78.11.6858. PMC 349151. PMID 6947260. 
  5. ^ Nguyen T, Zelechowska M, Foster V, Bergmann H, Verma DPS (1985). "Primary structure of the soybean nodulin-35 gene encoding uricase II localized in the peroxisomes of uninfected cells of nodules". Proc. Natl. Acad. Sci. U.S.A. 82 (15): 5040–5044. doi:10.1073/pnas.82.15.5040. PMC 390494. PMID 16593585. 

This article incorporates text from the public domain Pfam and InterPro IPR002042

This page is based on a Wikipedia article. The text is available under the Creative Commons Attribution/Share-Alike License.

This tab holds the annotation information that is stored in the Pfam database. As we move to using Wikipedia as our main source of annotation, the contents of this tab will be gradually replaced by the Wikipedia tab.

Uricase Provide feedback

No Pfam abstract.

Literature references

  1. Colloc'h N, el Hajji M, Bachet B, L'Hermite G, Schiltz M, Prange T, Castro B, Mornon JP; , Nat Struct Biol 1997;4:947-952.: Crystal structure of the protein drug urate oxidase-inhibitor complex at 2.05 A resolution. PUBMED:9360612 EPMC:9360612


External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR002042

Uricase (EC) (urate oxidase) [PUBMED:3182808] is the peroxisomal enzyme responsible for the degradation of urate into allantoin: Urate + O2 + H2O = 5-hydroxyisourate + H2O2 Some species, like primates and birds, have lost the gene for uricase and are therefore unable to degrade urate [PUBMED:2594778]. Uricase is a protein of 300 to 400 amino acids, its sequence is well conserved. It is mainly localised in the liver, where it forms a large electron-dense paracrystalline core in many peroxisomes [PUBMED:2338140]. The enzyme exists as a tetramer of identical subunits, each containing a possible type 2 copper-binding site [PUBMED:2594778]. In legumes, 2 forms of uricase are found: in the roots, the tetrameric form; and, in the uninfected cells of root nodules, a monomeric form, which plays an important role in nitrogen-fixation [PUBMED:16593585].

Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Pfam Clan

This family is a member of clan THBO-biosyn (CL0334), which has the following description:

The families in this clan bind purine or ptein in topologically similar sites between subunits.

The clan contains the following 6 members:

FolB GTP_cyclohydroI PTPS QueF QueF_N Uricase

Alignments

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(122)
Full
(880)
Representative proteomes NCBI
(906)
Meta
(5)
RP15
(154)
RP35
(286)
RP55
(410)
RP75
(499)
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  Seed
(122)
Full
(880)
Representative proteomes NCBI
(906)
Meta
(5)
RP15
(154)
RP35
(286)
RP55
(410)
RP75
(499)
Alignment:
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  Seed
(122)
Full
(880)
Representative proteomes NCBI
(906)
Meta
(5)
RP15
(154)
RP35
(286)
RP55
(410)
RP75
(499)
Raw Stockholm Download   Download   Download   Download   Download   Download   Download   Download  
Gzipped Download   Download   Download   Download   Download   Download   Download   Download  

You can also download a FASTA format file containing the full-length sequences for all sequences in the full alignment.

External links

MyHits provides a collection of tools to handle multiple sequence alignments. For example, one can refine a seed alignment (sequence addition or removal, re-alignment or manual edition) and then search databases for remote homologs using HMMER3.

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Trees

This page displays the phylogenetic tree for this family's seed alignment. We use FastTree to calculate neighbour join trees with a local bootstrap based on 100 resamples (shown next to the tree nodes). FastTree calculates approximately-maximum-likelihood phylogenetic trees from our seed alignment.

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Curation and family details

This section shows the detailed information about the Pfam family. You can see the definitions of many of the terms in this section in the glossary and a fuller explanation of the scoring system that we use in the scores section of the help pages.

Curation View help on the curation process

Seed source: Pfam-B_1333 (release 3.0)
Previous IDs: none
Type: Domain
Author: Bateman A, Griffiths-Jones SR
Number in seed: 122
Number in full: 880
Average length of the domain: 136.40 aa
Average identity of full alignment: 24 %
Average coverage of the sequence by the domain: 88.46 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 25.0 25.0
Trusted cut-off 26.0 25.8
Noise cut-off 24.3 23.9
Model length: 138
Family (HMM) version: 13
Download: download the raw HMM for this family

Species distribution

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Interactions

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Uricase

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Uricase domain has been found. There are 220 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.

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