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120  structures 902  species 1  interaction 1215  sequences 7  architectures

Family: Heme_oxygenase (PF01126)

Summary: Heme oxygenase

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This is the Wikipedia entry entitled "Heme oxygenase". More...

Heme oxygenase Edit Wikipedia article

heme oxygenase
Identifiers
EC number 1.14.99.3
CAS number 9059-22-7
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum
Gene Ontology AmiGO / EGO
Heme oxygenase
PDB 1twr EBI.jpg
crystal structures of ferrous and ferrous-no forms of verdoheme in a complex with human heme oxygenase-1: catalytic implications for heme cleavage
Identifiers
Symbol Heme_oxygenase
Pfam PF01126
Pfam clan CL0230
InterPro IPR016053
PROSITE PDOC00512
SCOP 1qq8
SUPERFAMILY 1qq8

Heme oxygenase or haem oxygenase (HO) is an enzyme that catalyzes the degradation of heme. This produces biliverdin, iron, and carbon monoxide.[1][2]

Reaction

Heme oxygenase cleaves the heme ring at the alpha-methene bridge to form either biliverdin or, if the heme is still attached to a globin, verdoglobin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.

The reaction occurs as follows:

Heme b + 3O2 + 3½NADPH + 3½H+ → biliverdin + Fe2+ + CO + 3½NADP+ + 3H2O[3]
Heme b 
Biliverdin 

This reaction can occur in virtually every cell; the classic example is the formation of a bruise, which goes through different colors as it gradually heals: red heme to green biliverdin to yellow bilirubin. Under normal physiological conditions, the activity of heme oxygenase is highest in the spleen, where old erythrocytes are sequestrated and destroyed. In terms of molecular mechanisms, the enzyme facilitates the intramolecular hydroxylation of one meso carbon centre in the heme. [4]

Isoforms

Three isoforms of heme oxygenase are known. Heme oxygenase 1 (HO-1) is an inducible isoform in response to stress such as oxidative stress, hypoxia, heavy metals, cytokines, etc. Heme oxygenase 2 (HO-2) is a constitutive isoform that is expressed under homeostatic conditions. Both HO-1 and HO-2 are ubiquitously expressed and catalytically active.

A third heme oxygenase (HO-3) is not catalytically active, but is thought to work in oxygen sensing.

Roles in Physiology

Heme oxygenase expression is induced by oxidative stress, and in animal models increasing this expression seems to protective. Carbon monoxide released from heme oxygenase reactions can influence vascular tone independently or influence the function of nitric oxide synthase. Carbon monoxide released from the reaction of free heme in the bloodstream of someone with the sickle-cell trait is believed to lessen the effects of cerebral Malaria.[5]

References

  1. ^ Kikuchi G, Yoshida T, Noguchi M (December 2005). "Heme oxygenase and heme degradation". Biochem. Biophys. Res. Commun. 338 (1): 558–67. doi:10.1016/j.bbrc.2005.08.020. PMID 16115609. 
  2. ^ Ryter, Stefan W.; Alam, Jawed; Choi, Augustine M. K. "Heme oxygenase-1/carbon monoxide: from basic science to therapeutic applications" Physiological Reviews (2006), 86(2), 583-650. doi:10.1152/physrev.00011.2005
  3. ^ Evans JP, Niemevz F, Buldain G, de Montellano PO (July 2008). "Isoporphyrin intermediate in heme oxygenase catalysis. Oxidation of alpha-meso-phenylheme". J. Biol. Chem. 283 (28): 19530–9. doi:10.1074/jbc.M709685200. PMC 2443647. PMID 18487208. 
  4. ^ Tadashi Yoshida, Catharina Taiko Migita "Focused Review Mechanism of heme degradation by heme oxygenase" Journal of Inorganic Biochemistry 2000, Volume 82, Issues 1–4, pages 33–41. doi:10.1016/S0162-0134(00)00156-2
  5. ^ Danielle Morse and Augustine M. K. Choi "Heme Oxygenase-1", American Journal of Respiratory and Critical Care Medicine, Vol. 172, No. 6 (2005), pp. 660-670. doi: 10.1164/rccm.200404-465SO

External links


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No Pfam abstract.

External database links

This tab holds annotation information from the InterPro database.

InterPro entry IPR016053

Haem oxygenase (EC) (HO) [PUBMED:3290025] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide [PUBMED:3032976]. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [PUBMED:8093563] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae [PUBMED:9326680]. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem [PUBMED:9006041]. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.

Gene Ontology

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Domain organisation

Below is a listing of the unique domain organisations or architectures in which this domain is found. More...

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Pfam Clan

This family is a member of clan HO (CL0230), which has the following description:

This clan includes the Heme oxygenase family as well as the TENA/THI-4/PQQC family that are less well characterised [2].

The clan contains the following 5 members:

DUF3050 DUF3865 Haem_oxygenas_2 Heme_oxygenase TENA_THI-4

Alignments

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(18)
Full
(1215)
Representative proteomes NCBI
(1089)
Meta
(282)
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(109)
RP35
(241)
RP55
(359)
RP75
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  Seed
(18)
Full
(1215)
Representative proteomes NCBI
(1089)
Meta
(282)
RP15
(109)
RP35
(241)
RP55
(359)
RP75
(452)
Alignment:
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  Seed
(18)
Full
(1215)
Representative proteomes NCBI
(1089)
Meta
(282)
RP15
(109)
RP35
(241)
RP55
(359)
RP75
(452)
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Curation and family details

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Seed source: Prosite
Previous IDs: Heme_oxygnease;
Type: Domain
Author: Finn RD, Bateman A
Number in seed: 18
Number in full: 1215
Average length of the domain: 182.30 aa
Average identity of full alignment: 20 %
Average coverage of the sequence by the domain: 75.77 %

HMM information View help on HMM parameters

HMM build commands:
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
Model details:
Parameter Sequence Domain
Gathering cut-off 20.2 20.2
Trusted cut-off 20.3 20.2
Noise cut-off 20.0 20.0
Model length: 205
Family (HMM) version: 15
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Species distribution

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Interactions

There is 1 interaction for this family. More...

Heme_oxygenase

Structures

For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the PDBe group, to allow us to map Pfam domains onto UniProt sequences and three-dimensional protein structures. The table below shows the structures on which the Heme_oxygenase domain has been found. There are 120 instances of this domain found in the PDB. Note that there may be multiple copies of the domain in a single PDB structure, since many structures contain multiple copies of the same protein seqence.

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