# STOCKHOLM 1.0 #=GF ID RNA_POL_M_15KD #=GF AC PF02150.17 #=GF DE RNA polymerases M/15 Kd subunit #=GF AU Bateman A;0000-0002-6982-4660 #=GF GA 25.2 25.2 #=GF NC 25.1 25.1 #=GF TC 25.2 25.2 #=GF SE IPR001529 #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 47079205 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF DR INTERPRO; IPR001529; #=GF DR PROSITE; PDOC00790; #=GF DR SCOP; 1i50; fa; #=GF DR SO; 0000417; polypeptide_domain; #=GF SQ 405 O13896.1/1-37 MQFCPTCGNHL..I...V.A..V...D..E..EGRN......aFDCRTCPYHFPISTF Q04307.1/2-37 LSFCPSCNNML..L...I.T..S...G..D..SGVY......tLACRSCPYEFPIEG- O94703.1/7-39 LIFCSECGNLL..E...S.T..T...A..Q..WTT-.......--CDQCQSVYPSEQF Q7Q4H0.2/17-54 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYKQEADSN P36958.2/18-55 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYKQEADSN P27999.1/4-40 FRFCRDCNNML..Y...P.R..E...D..K..ENNRl.....lFECRTCSYVEEAGS- P32529.1/7-42 LIFCLDCGDLL..E...N.P..N...A..V..LGSN.......VECSQCKAIYPKSQF D4A531.1/14-50 IRFCQECNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- P36954.1/14-50 IRFCQECNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- P60898.1/14-50 IRFCQECNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- Q1LVK2.1/15-51 IRFCQECNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- A0A1J1I4C4.1/14-50 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYKTEADS- A0A1S3IHZ2.1/14-50 IKFCQECNNML..Y...P.K..E...D..K..ENKIl.....aYACRNCDYQQEADN- A0A1D5PEI0.1/19-55 IRFCQECNNML..Y...P.K..E...D..K..ESRVl.....lYACRNCDYQQEADS- A0A2C9JEQ8.1/16-52 IRFCKECNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- D2A4H0.1/19-55 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYKQHADS- A0A2B4SWG1.1/16-52 IKFCQECNNML..Y...P.K..E...D..K..DNKIv.....lYACRNCDYQQEADN- A0A423U2S2.1/17-53 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYKMPTEN- A7SXH3.1/19-55 IKFCQECNNML..Y...P.K..E...D..K..DHKIl.....lYACRNCDYQQEADN- R4FN54.1/18-54 IRFCQECNNML..Y...P.K..E...D..K..ENKVl.....lYACRNCDYKQLADS- A0A4S2KEP4.1/17-51 --FCSECNNML..Y...P.K..E...D..K..RNKRl.....nYACRNCDYTQEADN- C3XRA2.1/14-49 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDYQQVAD-- K1QHM9.1/16-52 IKFCKECNNML..Y...P.K..E...D..K..ENKLl.....lYACRNCDYQEEATN- A0A2J7PNS2.1/19-55 IRFCQECNNML..Y...P.K..E...D..K..ENKVl.....lYACRNCEYKQLADS- R7TJF0.1/20-56 IKFCQECNNML..Y...P.K..E...D..K..DSRVl.....lYACRNCEYKQEADN- A0A444TBK9.1/13-48 IRFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDFKEPAR-- V3ZPP9.1/14-49 IRFCKECNNML..Y...P.K..E...D..K..DSKIl.....lYACRNCDYQQEAE-- Q59Z24.1/4-36 FRFCAECNNML..Y...P.K..E...D..K..EGQRl.....lYACRNCGYTE----- A0A2G8JUK9.1/18-54 IKFCQECNNML..Y...P.K..E...D..K..ENKIl.....lYACRNCDFQQEADN- A0A1X7V676.1/19-55 IQFCQECNNML..Y...P.K..E...D..K..ERKVl.....lHACRNCEYSQPAGD- A0A210PPK7.1/16-48 IRFCKECNNML..Y...P.K..E...D..K..EKRIm.....vYACRNCDYQQ----- A0A504YUH3.1/17-51 --FCSECNNML..Y...P.K..E...D..K..RNKLl.....nYACRNCDYTQEADN- A0A3S3Q5S9.1/13-48 IKFCQECNNML..Y...P.K..E...D..K..ENKVl.....lYACRNCDYKQIAD-- M7PJ52.1/1-35 MIFCPACGNHL..L...I.G..T...S..I..AGYN......rFECRTCPYEFPID-- G4V5C0.1/17-51 --FCSECNNML..Y...P.K..E...D..K..RTKTl.....yYACRNCDYSQEADN- B7PRG9.1/18-53 IKFCQECNNML..Y...P.K..E...D..K..ENRVl.....lYACRNCDYQQVAD-- A0A226DZ96.1/21-56 IKFCPECNNML..Y...P.R..E...D..K..ENRQl.....lYACRNCDYKQIAD-- A0A1D2MG47.1/10-45 IKFCPECNNML..Y...P.R..E...D..K..ENRQl.....lYACRNCDYKQLAD-- H9JEJ3.1/18-54 IQFCQECNNML..Y...P.R..E...D..K..NNKVl.....lYACRNCDYKQLADS- A0A1Y1Y6X1.1/4-40 FKFCSECNNML..Y...P.K..E...D..R..ENKIl.....lFACRNCDHQEESDN- A0A4U5MK21.1/9-41 IRFCPECNNML..Y...P.R..E...D..K..ENRQl.....iYACRNCDHKQ----- O29033.1/1-31 MEFCPKCKSLM..I...Y.Q..G...D..K..LV--.......--CRKCGYEKEADD- A0A0N5A915.1/12-44 IKFCPECNNML..Y...P.K..E...D..K..ENRQl.....lYACRNCDHKQ----- A0A2G5BD78.1/4-39 IKFCQDCSNML..Y...P.R..V...D..Q..VHRRl.....mYACRNCNYEEEAQ-- A0A087SV37.1/20-52 IKFCQECNNML..Y...P.R..E...D..K..ENKVl.....lYACRNCDYQE----- Q58548.1/2-32 VKFCPKCNNLM..L...P.K..D...G..K..LK--.......--CAVCGYEEETTA- A0A0L8G6A6.1/19-51 IKFCKECNNML..Y...P.K..E...D..K..ANKIl.....lYACRNCQYQE----- A0A267DAR5.1/36-68 --FCQECNNML..Y...P.R..E...D..K..ANRQl.....vYSCRNCGYSQPA--- A0A267EEM9.1/39-71 --FCQECNNML..Y...P.R..E...D..K..ANRQl.....vYSCRNCGYSQPA--- A0A177UM48.1/4-38 LNFCRECNNLL..Y...P.Q..V...D..R..SNQVl.....lYACKNCNYHEEA--- A0A1B8GUL1.2/21-55 FRFCSECSNML..Y...P.K..E...D..N..DTRQl.....qFACRTCQYSEPA--- A0A1P6CBC0.1/10-41 IKFCPECNNML..Y...P.K..E...D..K..ENRQl.....lYACRNCDHK------ A0A482WML9.1/18-54 IRFCQECNNML..Y...P.K..E...D..K..ENKVl.....lYACRNCDFKQLADS- U5HF96.1/4-39 ISFCGECNNLL..Y...P.K..E...D..K..VSHVl.....mYACRNCHYKEETT-- A0A1E3PFE5.1/4-36 FRFCLECNNML..Y...P.K..E...D..K..INQRl.....lFSCRNCPYTE----- E9GM94.1/16-46 IRFCPSCNNML..Y...P.K..E...D..K..ENRAl.....lYACRNCDF------- A0A158NS48.1/19-55 IRFCQECNNML..Y...P.K..E...D..K..ENKVl.....mYACRNCDFKQLADS- A0A1V9XW96.1/17-49 IKFCQECNNML..Y...P.K..E...D..K..ENRQl.....lFACRNCDFQQ----- A0A0R3PPZ8.1/9-41 IKFCPECNNML..Y...P.R..E...D..K..EHRQl.....mYACRNCDHKE----- X1WRF9.1/16-51 IRFCQECNNML..Y...P.K..E...D..K..EHKVl.....lYACRNCDHRQMAD-- A0A165FZK2.1/20-56 FRFCRECSNML..Y...P.K..E...D..R..LSNTl.....mFACRTCQFSEPATS- B3RJJ7.1/18-49 IQFCQECNNML..Y...P.K..E...D..K..ENKVl.....rYMCRNCEYS------ A0A0B2W1V7.1/10-41 IKFCPECNNML..Y...P.K..E...D..K..ENRQl.....mYACRNCDHK------ A0A2A2KQT2.1/13-45 IKFCPECNNML..Y...P.K..E...D..K..EHRQl.....lYACRNCDHKQ----- C4WT20.1/16-51 IRFCQECNNML..Y...P.K..E...D..K..EHKVl.....lYACRNCDHRQMAD-- A0A2K3LAQ8.1/4-40 MKFCRECNNIL..Y...P.K..E...D..K..EQKIl.....lYACRNCDHQEAADN- J9K2S8.2/16-50 IRFCQECNNML..Y...P.K..E...D..K..EHKVl.....lYACRNCDHRQMA--- Q8U264.1/2-33 VKFCPKCGSIM..I...P.D..R...R..R..GV--.......FVCRKCGYEEPIN-- A0A1E3Q7X5.1/4-36 FRFCVECNNML..Y...P.K..E...D..K..INQRl.....lYSCRNCSYKE----- A0A0R3WDW3.1/14-48 --FCSECNNML..Y...P.K..E...D..K..RHKRl.....mYACRNCEFMQPADN- A0A178URI7.1/4-39 MKFCRECNNIL..Y...P.K..E...D..K..EQSIl.....lYACRNCDHQEAAD-- Q8L5V0.1/4-39 MKFCRECNNIL..Y...P.K..E...D..K..EQSIl.....lYACRNCDHQEAAD-- A0A1Z5TU79.1/23-59 FRFCRECSNML..Y...P.K..E...D..K..LNNQl.....mFACRMCQWAEPADA- R7YR94.1/21-57 FRFCGECSNLL..Y...P.Q..E...D..T..ENNKl.....mFACRSCRYSEPAHS- A0A0D1DVP0.1/4-39 LHFCAECNNLL..Y...P.E..V...D..R..TNHVl.....lYACRNCNYQQESR-- A0A1Q3E8E2.1/4-38 LQFCSECNNLL..Y...P.K..A...D..P..HRRIm.....vFACRICQYEEAS--- A0A090LKN8.1/41-74 IKFCPECNNML..Y...P.Q..E...D..K..ERRKl.....qFACRHCDFRQD---- A0A178VJH2.1/4-36 MKFCRECNNIL..Y...P.K..E...D..K..EQKIl.....lYACRNCDHQE----- Q6NLH0.1/4-36 MKFCRECNNIL..Y...P.K..E...D..K..EQKIl.....lYACRNCDHQE----- A0A2A9ND45.1/4-36 LHFCQECNNLL..Y...P.K..A...D..Q..LRRIm.....vYACRICQYDE----- M7AP92.1/95-125 ------CNNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- A0A074T7C5.1/6-37 MMFCPECNNML..Y...P.R..E...D..K..EKRQl.....qFLCRQCDYS------ A0A0C3LGV9.1/1-34 MIFCPSCANML..I...I.S..A...-..E..TGAN......kWACQTCPYEFPIE-- A0A1Y2I216.1/1-36 MIFCPQCGNLL..I...L.S..L...G..P..EGNQ......rFSCRTCPYVFNIAQ- A0A3N4I633.1/23-58 FRFCRECSNML..Y...P.K..E...D..R..EAFRl.....vYRCRTCPYVEHAT-- A0A1Q3E7Z2.1/4-38 LQFCSECNNLL..Y...P.K..A...D..P..HRRIm.....vFACRICQYEEAS--- A0A397W737.1/4-38 FKFCSQCSNLL..Y...P.K..E...D..K..ETQRl.....lYACRNCIYQEET--- A0A0N4WBS2.1/396-428 IKFCPECNNML..Y...P.R..E...D..K..EHRQl.....mYACRNCDHKQ----- F4S6R3.1/4-39 LRFCRDCANLL..Y...P.R..A...D..K..VHKIl.....tYACRNCVYFEEAS-- A0A0L0T130.1/2-34 LMFCPQCGNML..A...L.E..E...D..P..GQ-R.......FACRTCPYIYPIT-- A0A0L0T4S1.1/2-34 LMFCPQCGNML..A...L.E..E...D..P..GQ-R.......FACRTCPYIYPIT-- D3T9I3.1/2-30 --FCPKCGSLM..H...P.K..D...G..K..WV--.......--CSSCGYEMPIDK- A0A2C5ZXI9.1/24-60 FRFCSECSNML..Y...P.K..E...D..E..DAHKl.....qFTCRTCQYTEEASS- E3JRV9.1/4-40 LKFCRDCANLL..Y...P.R..A...D..K..VHKVl.....tYACRNCVYFEEAAQ- A0A0V8RUI2.1/1-35 MKFCPRCGSLM..V...L.R..T...V..D..GKRV.......WVCPSCGYQEEVDG- A0A1Y2X9P2.1/22-58 FRFCAECSNML..Y...P.K..E...D..E..DAHKl.....qFTCRTCQYTEEATS- A0A024GVD4.1/6-42 IRFCRECNNML..Y...P.S..Q...D..R..ELRRl.....mFRCRNCGQAEEIEE- A0A0L0RZ86.1/10-42 -VFCPDCGNLL.dL...S.T..S...D..S..EVK-.......--CTLCSYRQPAEAF A0A0C3DWA8.1/4-36 LHFCSECNNLL..Y...P.K..A...D..A..QRRIm.....vYACRICQYEE----- A0A0L0S567.1/8-42 VRFCSDCNNLL..Y...P.R..E...D..R..VENRl.....lYACRRCGTQEEA--- A0A316UZJ3.1/10-46 LNFCAECNNLL..Y...P.E..V...D..R..SNHVl.....lYSCRNCNYREEARE- A0A087SR69.1/6-41 LRFCPESNDLL..Y...P.K..E...D..R..ANKRl.....vYHCRSCPYVEAAD-- A0A286UFE9.1/4-36 LHFCSECNNML..Y...P.K..A...D..Q..ARQVl.....vYACRICPYDE----- A0A059LHQ1.1/6-41 LRFCPESNDLL..Y...P.L..E...D..R..ERKRl.....vYHCRSCGYREDAD-- Q7SF80.2/5-38 --FCPFCANLL..I...L.S..R...A..D..TGGN......rLECRTCPYEHPIDK- Q965S0.1/56-85 IKFCPECNNML..Y...P.R..E...D..K..ESRVl.....mYSCRNCE-------- L2GTR7.1/4-39 -EFCPECNNML..Y...P.K..E...D..K..TEKQl.....yMACRNCEHVEEAMS- A0A177ED85.1/8-43 -QFCRECNNML..Y...P.K..E...D..K..QEKMl.....yLACRNCEHFEEASS- A0A0L0S7I7.1/10-42 -VFCPDCGNLL.dL...S.T..S...D..S..EVK-.......--CTLCSYRQPAEAF T1EMD4.1/11-46 IKFCQECNNML..Y...P.K..E...D..K..EQRKl.....lYSCRNCDFQMDAD-- A0A1Y1VF54.1/4-40 FHFCAECNNLL..Y...P.K..E...D..P..LNKQl.....lYACRNCEHQEEADN- A0A316URR1.1/1-35 MLFCPTCANIL..L...I.A..R...N..D..MGQN......eWACSTCPYHFPIQ-- M5GB67.1/7-43 IQFCIECNNLL..Y...P.R..A...D..K..DRHVl.....lYACRNCDFEYQATD- A0A077ZGL6.1/14-43 IKFCPECNNML..Y...P.R..E...N..K..EERVl.....mYSCRNCD-------- G4N0C4.1/23-57 FQFCAECSNML..Y...P.K..E...D..E..ETRTl.....qFTCRTCHYTTNA--- A0A4Q0A044.1/1-34 MLFCPQCSNML..T...N.D..M...G..Q..EVHA.......FVCRSCPYQFPIT-- C4JEG2.1/22-58 FRFCRECSNLL..Y...P.K..E...D..R..TTNTl.....mFSCRTCHVGEPATS- A0A2T0FMC7.1/4-39 FRFCLECNNML..Y...P.K..E...D..R..VNQQl.....lYSCRNCMYTEKAE-- A0A3M7PXJ4.1/380-415 -KFCRECNNML..Y...P.K..E...K..K..ETRQl.....fYSCRNCDHEEEAEN- V3ZM03.1/2-35 LRFCPTCANLL..F...V.E..E...G..D..KGYR.......FACHTCPYIKNIT-- A0A0C3BZM3.1/4-36 LQFCSECNNLL..Y...P.K..A...D..Q..ARRIm.....vYACRICAYDE----- A0A1D1V6U4.1/28-62 -MFCQECNNML..Y...P.R..E...N..K..ERKVl.....mYTCRNCDFSQEAG-- I0YSV9.1/7-42 LKFCPESNDLL..Y...P.K..E...D..R..ERRKl.....vYHCRNCGYQEDAD-- S8A5N4.1/23-58 FRFCRECSNML..Y...P.R..E...D..R..ANNRl.....lFGCRNCKFVEEAA-- D8RZ30.1/4-36 MKFCRECNNIL..Y...P.K..E...D..R..DQKIl.....lYACRNCDHQE----- A9TUT9.1/4-36 MKFCRECNNIL..Y...P.R..E...D..R..DKKVl.....lYACRNCDHQE----- I1RR25.1/23-58 FRFCSECSNML..Y...P.K..E...D..Q..DAHKl.....qFTCRTCQYTEDAK-- A0A165CQQ3.1/4-39 LHFCSECNNLL..Y...P.K..A...D..P..DRRVl.....vYACRMCPYDETAS-- A0A165YE20.1/12-43 --FCPDCGTLL..D...V.P..R...G..D..ETS-.......VACEQCGHEEPASS- D5E9S0.1/1-27 MEFCPKCKSMM..F...P.S..D...G..D..LK--.......--CRKCGYEK----- A0A075AUC9.1/3-32 LQFCPECSNLL..D...Y.P..G...D..Q..SHV-.......-TCNTCGYIQS---- R4XA39.1/4-34 -----ACGNHL..L...V.G..I...A..D..TGLN......rFECRTCPYQFPIEQ- A0A3N4LMX1.1/25-60 -KFCRECSNML..Y...P.K..E...N..K..VEMAl.....mYQCRTCSYTEPATS- A0A0C2X9Y9.1/4-36 LHFCQECNNLL..Y...P.R..A...D..P..QRRIm.....vYACRICPYDE----- A0A1D1VBG8.1/28-62 -MFCQECNNML..Y...P.R..E...N..K..ERKVl.....mYTCRNCDFSQEAG-- J9DJR3.1/3-36 IRFCQDCNNIL..Y...P.K..E...D..P..SQRLl.....yLACRTCDYTIE---- E0W154.1/20-40 IRFCPECNNML..Y...P.K..E...D..K..ESHI.......--------------- D8QRR8.1/4-39 MKFCRECNNIL..Y...P.K..E...D..R..DQKLl.....lYACRNCDHQEAAD-- A0A0S2M628.1/4-38 LKFCGECNNLL..Y...P.K..S...D..N..NAKVl.....lYQCRNCNYTENA--- O74635.1/4-36 FQYCIECNNML..Y...P.R..E...D..K..VDRVl.....rLACRNCDYSE----- A0A397I6I1.1/4-38 FKYCSQCGNLL..Y...P.R..E...D..K..ESHLl.....lYACRNCIYQEDT--- A0A1E3NXE4.1/2-35 LSFCPNCSNML..L...I.S..T...G..D..NNIH......rLNCPTCPYEFPI--- A0A1E5RYX0.1/2-37 LTFCPNCNNLL..P...V.E..Q...N..Q..ETGNf.....hLACRACPYDFKID-- A0A401PZH7.1/2-31 -------NNML..Y...P.K..E...D..K..ENRIl.....lYACRNCDYQQEADN- A0A075AWC7.1/1-34 MIFCPNCANLL..L...I.K..T...D..S..LARN......qFYCQTCPYIYTI--- A0A0K6FTE1.1/14-51 LQFCSECNNLL..Y...P.K..T...D..S..QRQLl.....sYACRICVGHEEESQN G7EAE2.1/1-35 MIFCPTCANLL..I...V.Q..T...S..E..QSTN......cFGCPTCPYLYPIK-- A0A2T9Z601.1/4-39 FKFCPECSNML..Y...P.K..E...Q..R..EIRQl.....lYACRNCEYQEKSD-- E1ZLF2.1/8-43 LRFCPESNDLL..Y...P.R..E...D..K..ERKKl.....vYFCRSCQYQEDAD-- A0A137QB11.1/21-53 LHFCSECNNLL..Y...P.K..A...D..Q..QRRVm.....vYACRICNYDE----- Q8GSD5.1/6-42 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